* using log directory 'd:/Rcompile/CRANpkg/local/4.5/CpGassoc.Rcheck'
* using R Under development (unstable) (2024-06-07 r86704 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'CpGassoc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CpGassoc' version '2.60'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CpGassoc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) Sample.data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sample.data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sample.data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sample.data.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sample.data.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sample.data.Rd:21: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [0s] ERROR
Running examples in 'CpGassoc-Ex.R' failed
The error most likely occurred in:

> ### Name: CpGassoc-package
> ### Title: Association Between Methylation and a Phenotype of Interest
> ### Aliases: CpGassoc-package CpGassoc
> ### Keywords: package
> 
> ### ** Examples
> 
> ###NOTE: If you are dealing with large data, do not specify large.data=FALSE. 
> ###The default option is true
> ##This will involve partitioning up the data and performing more gc() to clear up space
> ##Using cpg.assoc:
> data(samplecpg,samplepheno,package="CpGassoc")
Warning in readChar(con, 5L, useBytes = TRUE) :
  lzma decoder needed more memory
Error in load(file, envir = tmp_env) : empty (zero-byte) input file
Calls: data -> load
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s] ERROR
Error(s) in re-building vignettes:
--- re-building 'CpGassoc.Rnw' using Sweave
Loading required package: nlme
Warning in readChar(con, 5L, useBytes = TRUE) :
  lzma decoder needed more memory

Error: processing vignette 'CpGassoc.Rnw' failed with diagnostics:
 chunk 2 
Error in load(file, envir = tmp_env) : empty (zero-byte) input file

--- failed re-building 'CpGassoc.Rnw'

SUMMARY: processing the following file failed:
  'CpGassoc.Rnw'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [4s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 2 ERRORs, 1 NOTE