Last updated on 2024-05-09 17:51:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 25.15 | 301.89 | 327.04 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 20.58 | 235.56 | 256.14 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 408.39 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 440.84 | NOTE | |||
| r-devel-windows-x86_64 | 1.1.0 | 26.00 | 420.00 | 446.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.0 | 18.36 | 295.71 | 314.07 | NOTE | |
| r-release-linux-x86_64 | 1.1.0 | 19.30 | 293.49 | 312.79 | NOTE | |
| r-release-macos-arm64 | 1.1.0 | 5.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.0 | 417.00 | ERROR | |||
| r-release-windows-x86_64 | 1.1.0 | 25.00 | 418.00 | 443.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.0 | 149.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 329.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 29.00 | 602.00 | 631.00 | NOTE |
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ArchR’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ArchR’
Imports includes 31 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene'
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggbio’
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19'
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/211s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'BSgenome.Hsapiens.UCSC.hg19', 'chromVAR'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 14 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [73s/160s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Please use 'available.genomes()' (or 'available.genomes(type="source")')
to check the list of BSgenome data packages that are available in the
Bioconductor repositories for your version of R/Bioconductor.
If you don't find what you are looking for, please see the BSgenomeForge
vignette in the BSgenome software package for how to forge a BSgenome
data package for your organism of interest.
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
[ FAIL 2 | WARN 18 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64