| NEWS | R Documentation |
Backwards incompatible changes to the API partly due to generalization allowing for loss of immunity:
sir
expects constants = c(S0, I0, R0, gamma, delta),
no longer constants = c(gamma, S0, I0, R0).
fastbeta and fastbeta.bootstrap
expect constants = c(S0, I0, R0, gamma, delta),
no longer constants = c(gamma, S0, I0).
fastbeta returns (modulo attributes)
cbind(S, I, R, beta), no longer cbind(beta, S, I).
ptpi gains argument constants and loses
argument start.
It expects constants = c(Sa, Ia, Ra, gamma, delta),
no longer start = Sa.
ptpi(...)[[1L]] gives the state at time 0
or at time a conditional on new argument backcalc.
The default is a, no longer (implicitly) 0.
ptpi(...)[[4L]] has dimensions
c(b-a+1, 3, iter), no longer c(b-a+1, iter).
‘data/*.R’ are no longer copied into ‘inst/scripts’
at install time by a make rule in ‘src/Makevars’.
There is no need: the scripts are preserved due to the setting of
BuildResaveData: no. Hence ‘src/Makevars’ is removed.
Simulation sir.e01 is generated by the same parameters
but is no longer stochastic. Simulation sir.e02 gives the
stochastic variant.
Changes are logged in ‘inst/NEWS.Rd’.
Depends: R (>= 4.3.0) for amsmath in PDF
output, which was not supported until 4.2.2.
‘DESCRIPTION’ sets BuildResaveData: no,
so that R CMD build works without
--no-resave-data when fastbeta is not installed.
‘data/*.R’ are copied into ‘inst/scripts’
at install time by a make rule in ‘src/Makevars’.
Typo in ‘src/sir.c’ triggering -Wformat is fixed.