CRAN Package Check Results for Package ALDEx3

Last updated on 2026-08-03 18:50:06 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.2.0	85.04	304.60	389.64	ERROR
r-devel-linux-x86_64-debian-gcc	1.2.0	84.31	220.74	305.05	ERROR
r-devel-linux-x86_64-fedora-clang	1.2.0	57.00	257.26	314.26	ERROR
r-devel-linux-x86_64-fedora-gcc	1.2.0	86.00	199.21	285.21	ERROR
r-devel-windows-x86_64	1.2.0	101.00	325.00	426.00	ERROR
r-patched-linux-x86_64	1.2.0	113.48	300.64	414.12	OK
r-release-linux-x86_64	1.2.0	120.26	302.33	422.59	OK
r-release-macos-arm64	1.2.0	21.00	82.00	103.00	OK
r-release-macos-x86_64	1.2.0	70.00	429.00	499.00	OK
r-release-windows-x86_64	1.2.0	101.00	318.00	419.00	OK
r-oldrel-macos-arm64	1.2.0	21.00	81.00	102.00	OK
r-oldrel-macos-x86_64	1.2.0	70.00	425.00	495.00	OK
r-oldrel-windows-x86_64	1.2.0	139.00	455.00	594.00	OK

Check Details

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [143s/195s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [100s/137s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0XRPjr’ ‘~/tmp/scratch/Rtmp0x4oBa’ ‘~/tmp/scratch/Rtmp1832FC’ ‘~/tmp/scratch/Rtmp1Hct4p’ ‘~/tmp/scratch/Rtmp28oXKV’ ‘~/tmp/scratch/Rtmp2eZRCP’ ‘~/tmp/scratch/Rtmp2tjaki’ ‘~/tmp/scratch/Rtmp33Gdid’ ‘~/tmp/scratch/Rtmp3GMgnc’ ‘~/tmp/scratch/Rtmp3ZZDVE’ ‘~/tmp/scratch/Rtmp3kClxj’ ‘~/tmp/scratch/Rtmp4Fe34y’ ‘~/tmp/scratch/Rtmp4NhOJZ’ ‘~/tmp/scratch/Rtmp4XH6Yt’ ‘~/tmp/scratch/Rtmp4gfrPk’ ‘~/tmp/scratch/Rtmp4kz1D0’ ‘~/tmp/scratch/Rtmp4lUZMm’ ‘~/tmp/scratch/Rtmp5JpAiP’ ‘~/tmp/scratch/Rtmp6FCufo’ ‘~/tmp/scratch/Rtmp6OrSPA’ ‘~/tmp/scratch/Rtmp7Lu0S2’ ‘~/tmp/scratch/Rtmp7NbbtI’ ‘~/tmp/scratch/Rtmp7bMi0z’ ‘~/tmp/scratch/Rtmp7fWL4s’ ‘~/tmp/scratch/Rtmp7mBYik’ ‘~/tmp/scratch/Rtmp8NK1oR’ ‘~/tmp/scratch/Rtmp8dNiga’ ‘~/tmp/scratch/Rtmp98pS9S’ ‘~/tmp/scratch/Rtmp9RM6MT’ ‘~/tmp/scratch/RtmpA14dYv’ ‘~/tmp/scratch/RtmpAAvK9g’ ‘~/tmp/scratch/RtmpAWgoYs’ ‘~/tmp/scratch/RtmpAz70rn’ ‘~/tmp/scratch/RtmpBFJPGA’ ‘~/tmp/scratch/RtmpBcol9K’ ‘~/tmp/scratch/RtmpBl5Z7z’ ‘~/tmp/scratch/RtmpBvwT77’ ‘~/tmp/scratch/RtmpCjirrO’ ‘~/tmp/scratch/RtmpCkPw72’ ‘~/tmp/scratch/RtmpD0WELH’ ‘~/tmp/scratch/RtmpDTnkZi’ ‘~/tmp/scratch/RtmpDWDzfz’ ‘~/tmp/scratch/RtmpDyXlZz’ ‘~/tmp/scratch/RtmpEDeZhA’ ‘~/tmp/scratch/RtmpEiBHYu’ ‘~/tmp/scratch/RtmpFZ0pak’ ‘~/tmp/scratch/RtmpFfeyXW’ ‘~/tmp/scratch/RtmpFv5L7j’ ‘~/tmp/scratch/RtmpGI8heQ’ ‘~/tmp/scratch/RtmpGUe5sY’ ‘~/tmp/scratch/RtmpHqK9FA’ ‘~/tmp/scratch/RtmpHrMklh’ ‘~/tmp/scratch/RtmpIcPPMD’ ‘~/tmp/scratch/RtmpIhXEfu’ ‘~/tmp/scratch/RtmpIjgfP2’ ‘~/tmp/scratch/RtmpL6A7bS’ ‘~/tmp/scratch/RtmpLQjLFw’ ‘~/tmp/scratch/RtmpLYMx5e’ ‘~/tmp/scratch/RtmpLlwWa6’ ‘~/tmp/scratch/RtmpLx2U0v’ ‘~/tmp/scratch/RtmpM6yjca’ ‘~/tmp/scratch/RtmpMAkAqi’ ‘~/tmp/scratch/RtmpMBXMze’ ‘~/tmp/scratch/RtmpMsO8Zo’ ‘~/tmp/scratch/RtmpNB4ScL’ ‘~/tmp/scratch/RtmpNumdt4’ ‘~/tmp/scratch/RtmpOe4rFK’ ‘~/tmp/scratch/RtmpOgRwNl’ ‘~/tmp/scratch/RtmpOnYLGt’ ‘~/tmp/scratch/RtmpPLoooC’ ‘~/tmp/scratch/RtmpPXK3qk’ ‘~/tmp/scratch/RtmpPZnf17’ ‘~/tmp/scratch/RtmpPdaXWa’ ‘~/tmp/scratch/RtmpQX1ViH’ ‘~/tmp/scratch/RtmpQb3VCf’ ‘~/tmp/scratch/RtmpQnm6Mv’ ‘~/tmp/scratch/RtmpRKDZnl’ ‘~/tmp/scratch/RtmpRx4baq’ ‘~/tmp/scratch/RtmpSPMoev’ ‘~/tmp/scratch/RtmpTQSvhq’ ‘~/tmp/scratch/RtmpTr2nkr’ ‘~/tmp/scratch/RtmpUZd7RK’ ‘~/tmp/scratch/RtmpVfdq0V’ ‘~/tmp/scratch/RtmpVnJ7Vy’ ‘~/tmp/scratch/RtmpW9qq3A’ ‘~/tmp/scratch/RtmpWDJAUN’ ‘~/tmp/scratch/RtmpWR6tYI’ ‘~/tmp/scratch/RtmpWe93u3’ ‘~/tmp/scratch/RtmpWpeoIB’ ‘~/tmp/scratch/RtmpWr1FQz’ ‘~/tmp/scratch/RtmpX5tda4’ ‘~/tmp/scratch/RtmpXAWr8n’ ‘~/tmp/scratch/RtmpXlSmEP’ ‘~/tmp/scratch/RtmpYFBzGO’ ‘~/tmp/scratch/RtmpYimy4f’ ‘~/tmp/scratch/RtmpZ5TUTb’ ‘~/tmp/scratch/RtmpaVGFfz’ ‘~/tmp/scratch/RtmpaVOiGi’ ‘~/tmp/scratch/RtmpbDHUGC’ ‘~/tmp/scratch/RtmpbKJxKV’ ‘~/tmp/scratch/RtmpcNTLGb’ ‘~/tmp/scratch/Rtmpcmf8Cg’ ‘~/tmp/scratch/Rtmpcu3TED’ ‘~/tmp/scratch/RtmpdB74BC’ ‘~/tmp/scratch/RtmpduGZlj’ ‘~/tmp/scratch/Rtmpe8FpT9’ ‘~/tmp/scratch/RtmpeCr1D4’ ‘~/tmp/scratch/RtmpeP6Zdb’ ‘~/tmp/scratch/RtmpezCAeS’ ‘~/tmp/scratch/Rtmpf6cuv7’ ‘~/tmp/scratch/RtmpfWD4p6’ ‘~/tmp/scratch/Rtmpfii3JB’ ‘~/tmp/scratch/RtmpghcT0N’ ‘~/tmp/scratch/RtmphWjvPx’ ‘~/tmp/scratch/RtmphWmLOt’ ‘~/tmp/scratch/RtmphdKeEz’ ‘~/tmp/scratch/Rtmphepb6q’ ‘~/tmp/scratch/RtmphfTkkL’ ‘~/tmp/scratch/RtmphowZmn’ ‘~/tmp/scratch/RtmpjFziMA’ ‘~/tmp/scratch/RtmpjQAobp’ ‘~/tmp/scratch/RtmpjcufDE’ ‘~/tmp/scratch/Rtmpk1I3KU’ ‘~/tmp/scratch/RtmpkXIzan’ ‘~/tmp/scratch/RtmpkdaTKu’ ‘~/tmp/scratch/RtmpkyIGx4’ ‘~/tmp/scratch/Rtmpl3puU4’ ‘~/tmp/scratch/Rtmpl4Mg6O’ ‘~/tmp/scratch/RtmpmMN8aG’ ‘~/tmp/scratch/RtmpmQVOZL’ ‘~/tmp/scratch/RtmpnAOEDr’ ‘~/tmp/scratch/RtmpnD7eI4’ ‘~/tmp/scratch/Rtmpo2VsxB’ ‘~/tmp/scratch/RtmpoA8oxg’ ‘~/tmp/scratch/RtmpoLaK1M’ ‘~/tmp/scratch/RtmppGRkhy’ ‘~/tmp/scratch/Rtmppmln8P’ ‘~/tmp/scratch/RtmpqHEs7p’ ‘~/tmp/scratch/RtmpqpZQ1S’ ‘~/tmp/scratch/RtmprP5jdo’ ‘~/tmp/scratch/RtmprkG34D’ ‘~/tmp/scratch/Rtmprl6aDL’ ‘~/tmp/scratch/RtmprsvTrL’ ‘~/tmp/scratch/RtmprudBsc’ ‘~/tmp/scratch/RtmprwT8zP’ ‘~/tmp/scratch/RtmpsJb31p’ ‘~/tmp/scratch/Rtmpssu08g’ ‘~/tmp/scratch/Rtmptc8tT9’ ‘~/tmp/scratch/RtmptfWxLw’ ‘~/tmp/scratch/RtmptigEPh’ ‘~/tmp/scratch/RtmptssAVx’ ‘~/tmp/scratch/RtmptuvIwK’ ‘~/tmp/scratch/RtmpuI4ky1’ ‘~/tmp/scratch/RtmpvKgPgV’ ‘~/tmp/scratch/RtmpvhASfO’ ‘~/tmp/scratch/RtmpvuAlHg’ ‘~/tmp/scratch/RtmpwC4alU’ ‘~/tmp/scratch/RtmpwlmiSe’ ‘~/tmp/scratch/Rtmpwscbl4’ ‘~/tmp/scratch/RtmpylLIV5’ ‘~/tmp/scratch/RtmpzbIGsv’ ‘~/tmp/scratch/RtmpzhAMG1’ ‘~/tmp/scratch/RtmpzlB9LI’ ‘~/tmp/scratch/RtmpzvSak0’ ‘~/tmp/scratch/Rtmpzx53g9’ ‘~/tmp/scratch/xvfb-run.1NA9xI’ ‘~/tmp/scratch/xvfb-run.21mFzC’ ‘~/tmp/scratch/xvfb-run.2d778V’ ‘~/tmp/scratch/xvfb-run.37A3SM’ ‘~/tmp/scratch/xvfb-run.41xVjH’ ‘~/tmp/scratch/xvfb-run.4EybFs’ ‘~/tmp/scratch/xvfb-run.5LrLmY’ ‘~/tmp/scratch/xvfb-run.5yId20’ ‘~/tmp/scratch/xvfb-run.5ykadz’ ‘~/tmp/scratch/xvfb-run.6lMLBO’ ‘~/tmp/scratch/xvfb-run.79eEdf’ ‘~/tmp/scratch/xvfb-run.7U7bWT’ ‘~/tmp/scratch/xvfb-run.8zm3lj’ ‘~/tmp/scratch/xvfb-run.9AAlMQ’ ‘~/tmp/scratch/xvfb-run.9PAjm3’ ‘~/tmp/scratch/xvfb-run.AXmc5A’ ‘~/tmp/scratch/xvfb-run.BAgWNK’ ‘~/tmp/scratch/xvfb-run.BMhupe’ ‘~/tmp/scratch/xvfb-run.C2o77p’ ‘~/tmp/scratch/xvfb-run.CbjDtU’ ‘~/tmp/scratch/xvfb-run.E9Z6Un’ ‘~/tmp/scratch/xvfb-run.EsWPvz’ ‘~/tmp/scratch/xvfb-run.F9z2GX’ ‘~/tmp/scratch/xvfb-run.Fp8WAw’ ‘~/tmp/scratch/xvfb-run.Fv2L1t’ ‘~/tmp/scratch/xvfb-run.GwTJKY’ ‘~/tmp/scratch/xvfb-run.H5rlCr’ ‘~/tmp/scratch/xvfb-run.ILzknz’ ‘~/tmp/scratch/xvfb-run.IXyiOh’ ‘~/tmp/scratch/xvfb-run.J4z7Nf’ ‘~/tmp/scratch/xvfb-run.JKmm78’ ‘~/tmp/scratch/xvfb-run.KlABmC’ ‘~/tmp/scratch/xvfb-run.LjGnPF’ ‘~/tmp/scratch/xvfb-run.M24BtJ’ ‘~/tmp/scratch/xvfb-run.NAPU1h’ ‘~/tmp/scratch/xvfb-run.NcnibJ’ ‘~/tmp/scratch/xvfb-run.Nr5sXV’ ‘~/tmp/scratch/xvfb-run.PyUlp5’ ‘~/tmp/scratch/xvfb-run.Q8Lt3A’ ‘~/tmp/scratch/xvfb-run.QRWTjq’ ‘~/tmp/scratch/xvfb-run.RAPGAC’ ‘~/tmp/scratch/xvfb-run.RDPU9W’ ‘~/tmp/scratch/xvfb-run.RTHPkG’ ‘~/tmp/scratch/xvfb-run.RZxaGe’ ‘~/tmp/scratch/xvfb-run.SRBmHP’ ‘~/tmp/scratch/xvfb-run.SWMC3l’ ‘~/tmp/scratch/xvfb-run.TTe6sp’ ‘~/tmp/scratch/xvfb-run.TgbEtk’ ‘~/tmp/scratch/xvfb-run.Tv73ri’ ‘~/tmp/scratch/xvfb-run.VbXOgt’ ‘~/tmp/scratch/xvfb-run.bOATv8’ ‘~/tmp/scratch/xvfb-run.dH90YG’ ‘~/tmp/scratch/xvfb-run.dYFViP’ ‘~/tmp/scratch/xvfb-run.dpLJYC’ ‘~/tmp/scratch/xvfb-run.eJyH1m’ ‘~/tmp/scratch/xvfb-run.ePeXnL’ ‘~/tmp/scratch/xvfb-run.fppcdc’ ‘~/tmp/scratch/xvfb-run.gSzxz9’ ‘~/tmp/scratch/xvfb-run.gVc893’ ‘~/tmp/scratch/xvfb-run.il55wV’ ‘~/tmp/scratch/xvfb-run.itVSIi’ ‘~/tmp/scratch/xvfb-run.mK2f0J’ ‘~/tmp/scratch/xvfb-run.nLJAOt’ ‘~/tmp/scratch/xvfb-run.nNTySZ’ ‘~/tmp/scratch/xvfb-run.oDKFnz’ ‘~/tmp/scratch/xvfb-run.pt3tjt’ ‘~/tmp/scratch/xvfb-run.rOqP2Q’ ‘~/tmp/scratch/xvfb-run.rPov1q’ ‘~/tmp/scratch/xvfb-run.rbgstk’ ‘~/tmp/scratch/xvfb-run.tEErgZ’ ‘~/tmp/scratch/xvfb-run.tOS20k’ ‘~/tmp/scratch/xvfb-run.ufLFY3’ ‘~/tmp/scratch/xvfb-run.vGaZuI’ ‘~/tmp/scratch/xvfb-run.vtXtuY’ ‘~/tmp/scratch/xvfb-run.waSjxu’ ‘~/tmp/scratch/xvfb-run.xWOYQh’ ‘~/tmp/scratch/xvfb-run.y8K2EG’ ‘~/tmp/scratch/xvfb-run.yRiSW1’ ‘~/tmp/scratch/xvfb-run.yloQj6’ ‘~/tmp/scratch/xvfb-run.z36BxX’ ‘~/tmp/scratch/xvfb-run.zQMBXW’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: compiled code
Result: NOTE File ‘ALDEx3/libs/ALDEx3.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [120s/128s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [93s/98s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.0
Check: tests
Result: ERROR Running 'testthat.R' [148s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64