CRAN Package Check Results for Package CohortCharacteristics

Last updated on 2026-03-15 22:52:38 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.1.1	7.24	880.62	887.86	OK
r-devel-linux-x86_64-debian-gcc	1.1.1	4.89	596.04	600.93	ERROR
r-devel-linux-x86_64-fedora-clang	1.1.1	12.00			ERROR
r-devel-linux-x86_64-fedora-gcc	1.1.1	12.00	1413.06	1425.06	ERROR
r-devel-macos-arm64	1.1.1	2.00	134.00	136.00	OK
r-devel-windows-x86_64	1.1.1	9.00	546.00	555.00	OK
r-patched-linux-x86_64	1.1.1	7.40	827.98	835.38	OK
r-release-linux-x86_64	1.1.1	5.28	832.23	837.51	OK
r-release-macos-arm64	1.1.1	2.00	136.00	138.00	OK
r-release-macos-x86_64	1.1.1	5.00	454.00	459.00	OK
r-release-windows-x86_64	1.1.1	9.00	530.00	539.00	OK
r-oldrel-macos-arm64	1.1.1	2.00	135.00	137.00	NOTE
r-oldrel-macos-x86_64	1.1.1	5.00	622.00	627.00	WARN
r-oldrel-windows-x86_64	1.1.1	13.00	792.00	805.00	NOTE

Check Details

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [383s/249s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-15 13:08:43.09955 > test-plotCohortTiming.R: v Summary finished, at 2026-03-15 13:08:43.296808 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-15 13:08:50.476318 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-15 13:08:50.587996 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 13:10:30.257894 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 13:10:30.608397 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 13:10:38.574039 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 13:10:39.33595 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 Saving _problems/test-summariseCohortTiming-63.R > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f55c049c944] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f55c049c971] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f55c049f9e1] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1a9) [0x7f55c07b2559] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x9073cd) [0x7f55bf9073cd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f55c1097c38] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x86) [0x7f55c1099966] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f55c1099f2f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x86) [0x7f55c079fae6] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2fa) [0x7f55c079fd5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f55c10aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f55c079fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f55c10aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f55c079fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f55c10aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f55c079fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f55c07a04da] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f55c07a06ca] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x691) [0x7f55c0e91a41] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x47a) [0x7f55c0e9218a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e92847) [0x7f55c0e92847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f55c0e6d714] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1be) [0x7f55c0e71eee] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f55c0e94975] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f55c0e94a20] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x444) [0x7f55bfb759a4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f55bfbf1c7a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x108d6e) [0x7f55dcb08d6e] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x147420) [0x7f55dcb47420] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x157f34) [0x7f55dcb57f34] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f55dcb5781a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x157f34) [0x7f55dcb57f34] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158245) [0x7f55dcb58245] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1501b4) [0x7f55dcb501b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x157f34) [0x7f55dcb57f34] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158245) [0x7f55dcb58245] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1501b4) [0x7f55dcb501b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d7f8) [0x7f55c6c287f8] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x107053) [0x7f55dcb07053] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd64) [0x7f55dcb4bd64] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15c8ad) [0x7f55dcb5c8ad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b1fc) [0x7f55dcb5b1fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be5b) [0x7f55dcb4be5b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f55dcb5a769] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library/methods/libs/methods.so(+0x5ba0) [0x7f55d9c81ba0] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a8932) [0x7f55dcba8932] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x150f57) [0x7f55dcb50f57] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ae79) [0x7f55dcb5ae79] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a62c3) [0x7f55dcba62c3] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6847) [0x7f55dcba6847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c3c) [0x7f55dcba6c3c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bb4f) [0x7f55dcb4bb4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ae79) [0x7f55dcb5ae79] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a62c3) [0x7f55dcba62c3] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6847) [0x7f55dcba6847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c3c) [0x7f55dcba6c3c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bb4f) [0x7f55dcb4bb4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ae79) [0x7f55dcb5ae79] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a62c3) [0x7f55dcba62c3] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a69d9) [0x7f55dcba69d9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c3c) [0x7f55dcba6c3c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bb4f) [0x7f55dcb4bb4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15c8ad) [0x7f55dcb5c8ad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b1fc) [0x7f55dcb5b1fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ddbf) [0x7f55dcb5ddbf] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd64) [0x7f55dcb4bd64] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e284) [0x7f55dcb5e284] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd64) [0x7f55dcb4bd64] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f55c049c944] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f55c049c971] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f55c049f9e1] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1a9) [0x7f55c07b2559] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x9073cd) [0x7f55bf9073cd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f55c1097c38] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x86) [0x7f55c1099966] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f55c1099f2f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x86) [0x7f55c079fae6] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2fa) [0x7f55c079fd5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f55c10aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f55c079fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f55c10aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f55c079fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f55c10aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f55c079fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f55c07a04da] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f55c07a06ca] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x691) [0x7f55c0e91a41] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x47a) [0x7f55c0e9218a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e92847) [0x7f55c0e92847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f55c0e6d714] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1be) [0x7f55c0e71eee] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f55c0e94975] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f55c0e94a20] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x444) [0x7f55bfb759a4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f55bfbf1c7a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x108d6e) [0x7f55dcb08d6e] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x147420) [0x7f55dcb47420] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x157f34) [0x7f55dcb57f34] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f55dcb5781a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x157f34) [0x7f55dcb57f34] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158245) [0x7f55dcb58245] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1501b4) [0x7f55dcb501b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x157f34) [0x7f55dcb57f34] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158245) [0x7f55dcb58245] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1501b4) [0x7f55dcb501b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d7f8) [0x7f55c6c287f8] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x107053) [0x7f55dcb07053] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd64) [0x7f55dcb4bd64] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15c8ad) [0x7f55dcb5c8ad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b1fc) [0x7f55dcb5b1fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be5b) [0x7f55dcb4be5b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f55dcb5a769] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library/methods/libs/methods.so(+0x5ba0) [0x7f55d9c81ba0] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a8932) [0x7f55dcba8932] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x150f57) [0x7f55dcb50f57] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ae79) [0x7f55dcb5ae79] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a62c3) [0x7f55dcba62c3] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6847) [0x7f55dcba6847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c3c) [0x7f55dcba6c3c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bb4f) [0x7f55dcb4bb4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ae79) [0x7f55dcb5ae79] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a62c3) [0x7f55dcba62c3] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6847) [0x7f55dcba6847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c3c) [0x7f55dcba6c3c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bb4f) [0x7f55dcb4bb4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ae79) [0x7f55dcb5ae79] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a62c3) [0x7f55dcba62c3] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a69d9) [0x7f55dcba69d9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c3c) [0x7f55dcba6c3c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bb4f) [0x7f55dcb4bb4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15c8ad) [0x7f55dcb5c8ad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b1fc) [0x7f55dcb5b1fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f55dcb579f7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15ddbf) [0x7f55dcb5ddbf] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd64) [0x7f55dcb4bd64] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15961f) [0x7f55dcb5961f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a408) [0x7f55dcb5a408] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f55dcb5774a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e284) [0x7f55dcb5e284] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd64) [0x7f55dcb4bd64] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15722b) [0x7f55dcb5722b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f55dcb5760b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [14m/15m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-13 10:26:06.429228 > test-plotCohortTiming.R: v Summary finished, at 2026-03-13 10:26:07.185808 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, median, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-13 10:26:38.674767 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-13 10:26:39.046901 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-13 10:32:40.830687 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-13 10:32:41.898119 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-13 10:33:06.172241 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-13 10:33:08.170675 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7f9cf9874004] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7f9cf9c1ef26] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7f9cf9c01748] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7f9cfa75cbd7] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7f9cfa75c89b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7f9cfa75b89a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7f9cf9c01220] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7f9cf9c00b46] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f9cfa75b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7f9cf9c01215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f9cfa75b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7f9cf9c01215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f9cfa75b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7f9cf9c01215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7f9cf9c15d95] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7f9cf9c15cab] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7f9cfa499ac5] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7f9cfa49a79b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7f9cfa507790] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7f9cfa49cc3a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7f9cfa49d002] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7f9cfa49d3ec] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7f9cfa4ad77e] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7f9cf8d0535c] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7f9cf8d6f6c6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x564c4e60b513] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xd9428) [0x564c4e655428] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc77d4) [0x564c4e6437d4] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x564c4e642dce] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc77d4) [0x564c4e6437d4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdb530) [0x564c4e657530] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcbc09) [0x564c4e647c09] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc77d4) [0x564c4e6437d4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdb530) [0x564c4e657530] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcbc09) [0x564c4e647c09] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7f9d0b6ba7d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x564c4e6094d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce1f4) [0x564c4e64a1f4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe42c8) [0x564c4e6602c8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe340b) [0x564c4e65f40b] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcda83) [0x564c4e649a83] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x564c4e65dbab] /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7f9d0d66775b] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12d9fa) [0x564c4e6a99fa] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcda03) [0x564c4e649a03] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7ea6) [0x564c4e643ea6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12af02) [0x564c4e6a6f02] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12a825) [0x564c4e6a6825] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b45e) [0x564c4e6a745e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce456) [0x564c4e64a456] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7ea6) [0x564c4e643ea6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12af02) [0x564c4e6a6f02] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12a825) [0x564c4e6a6825] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b45e) [0x564c4e6a745e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce456) [0x564c4e64a456] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7ea6) [0x564c4e643ea6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12af02) [0x564c4e6a6f02] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12a929) [0x564c4e6a6929] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b45e) [0x564c4e6a745e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce456) [0x564c4e64a456] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe42c8) [0x564c4e6602c8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe340b) [0x564c4e65f40b] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5738) [0x564c4e661738] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce1f4) [0x564c4e64a1f4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5b18) [0x564c4e661b18] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce1f4) [0x564c4e64a1f4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7f9cf9874004] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7f9cf9c1ef26] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7f9cf9c01748] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7f9cfa75cbd7] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7f9cfa75c89b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7f9cfa75b89a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7f9cf9c01220] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7f9cf9c00b46] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f9cfa75b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7f9cf9c01215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f9cfa75b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7f9cf9c01215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f9cfa75b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7f9cf9c01215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7f9cf9c15d95] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7f9cf9c15cab] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7f9cfa499ac5] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7f9cfa49a79b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7f9cfa507790] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7f9cfa49cc3a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7f9cfa49d002] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7f9cfa49d3ec] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7f9cfa4ad77e] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7f9cf8d0535c] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7f9cf8d6f6c6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x564c4e60b513] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xd9428) [0x564c4e655428] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc77d4) [0x564c4e6437d4] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x564c4e642dce] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc77d4) [0x564c4e6437d4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdb530) [0x564c4e657530] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcbc09) [0x564c4e647c09] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc77d4) [0x564c4e6437d4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdb530) [0x564c4e657530] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcbc09) [0x564c4e647c09] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7f9d0b6ba7d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x564c4e6094d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce1f4) [0x564c4e64a1f4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe42c8) [0x564c4e6602c8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe340b) [0x564c4e65f40b] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcda83) [0x564c4e649a83] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x564c4e65dbab] /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7f9d0d66775b] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12d9fa) [0x564c4e6a99fa] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcda03) [0x564c4e649a03] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7ea6) [0x564c4e643ea6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12af02) [0x564c4e6a6f02] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12a825) [0x564c4e6a6825] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b45e) [0x564c4e6a745e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce456) [0x564c4e64a456] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7ea6) [0x564c4e643ea6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12af02) [0x564c4e6a6f02] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12a825) [0x564c4e6a6825] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b45e) [0x564c4e6a745e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce456) [0x564c4e64a456] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7ea6) [0x564c4e643ea6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12af02) [0x564c4e6a6f02] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12a929) [0x564c4e6a6929] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b45e) [0x564c4e6a745e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce456) [0x564c4e64a456] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe42c8) [0x564c4e6602c8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe340b) [0x564c4e65f40b] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x564c4e642f30] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5738) [0x564c4e661738] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce1f4) [0x564c4e64a1f4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x564c4e643156] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5b18) [0x564c4e661b18] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce1f4) [0x564c4e64a1f4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc757c) [0x564c4e64357c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x564c4e642d05] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xded99) [0x564c4e65ad99] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde29c) [0x564c4e65a29c] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [15m/22m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-14 19:55:04.387553 > test-plotCohortTiming.R: v Summary finished, at 2026-03-14 19:55:05.876387 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-14 19:55:47.232282 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-14 19:55:47.579412 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:03.070329 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:06.493119 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:46.521651 > test-summariseCohortTiming.R: ======>------------------------ 1/5 group-strata combinations @ 2026-03-14 20... > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: ============>------------------ 2/5 group-strata combinations @ 2026-03-14 20... > test-summariseCohortTiming.R: ==============================> 5/5 group-strata combinations @ 2026-03-14 20... > test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:50.528963 Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed] /data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed] /data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1.1
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: doc 3.6Mb help 1.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.1
Check: for code/documentation mismatches
Result: WARN Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd': mockCohortCharacteristics Code: function(con = NULL, writeSchema = NULL, numberIndividuals = 10, ..., seed = NULL) Docs: function(numberIndividuals = 10, ..., source = "local", con = lifecycle::deprecated(), writeSchema = lifecycle::deprecated(), seed = lifecycle::deprecated()) Argument names in docs not in code: source Mismatches in argument names (first 3): Position: 1 Code: con Docs: numberIndividuals Position: 2 Code: writeSchema Docs: ... Position: 3 Code: numberIndividuals Docs: source Mismatches in argument default values: Name: 'con' Code: NULL Docs: lifecycle::deprecated() Name: 'writeSchema' Code: NULL Docs: lifecycle::deprecated() Name: 'seed' Code: NULL Docs: lifecycle::deprecated() Flavor: r-oldrel-macos-x86_64