Last updated on 2026-10-24 13:51:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 10.11 | 407.34 | 417.45 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 6.36 | 68.68 | 75.04 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 7.00 | 283.96 | 290.96 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 301.15 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 12.00 | 432.00 | 444.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 7.51 | 382.36 | 389.87 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 8.39 | 381.74 | 390.13 | OK | |
| r-release-macos-arm64 | 1.0.2 | 2.00 | 124.00 | 126.00 | OK | |
| r-release-macos-x86_64 | 1.0.2 | 7.00 | 350.00 | 357.00 | OK | |
| r-release-windows-x86_64 | 1.0.2 | 12.00 | 431.00 | 443.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 2.00 | 113.00 | 115.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.2 | 6.00 | 320.00 | 326.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.2 | 14.00 | 552.00 | 566.00 | OK |
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in ‘Landmarking-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fit_LOCF_landmark
> ### Title: Fit a landmark model using a last observation carried forward
> ### (LOCF) method for the longitudinal data
> ### Aliases: fit_LOCF_landmark
>
> ### ** Examples
>
> library(Landmarking)
> data(data_repeat_outcomes)
> data_model_landmark_LOCF <-
+ fit_LOCF_landmark(
+ data_long = data_repeat_outcomes,
+ x_L = c(60, 61),
+ x_hor = c(65, 66),
+ covariates =
+ c("ethnicity", "smoking", "diabetes", "sbp_stnd", "tchdl_stnd"),
+ covariates_time =
+ c(rep("response_time_sbp_stnd", 4), "response_time_tchdl_stnd"),
+ k = 10,
+ individual_id = "id",
+ event_time = "event_time",
+ event_status = "event_status",
+ survival_submodel = "cause_specific"
+ )
Warning in FUN(X[[i]], ...) :
887 individuals have been removed from the model building as they are not in the risk set at landmark age 60
Warning in FUN(X[[i]], ...) :
745 individuals have been removed from the model building as they are not in the risk set at landmark age 61
Fitting longitudinal submodel, landmark age 60
Complete, landmark age 60
Fitting survival submodel, landmark age 60
Warning in coxph.fit(X, Y, istrat, offset, init, control, weights = weights, :
Loglik converged before variable 2,4 ; coefficient may be infinite.
Error in a$specials[[i]] : subscript out of bounds
Calls: fit_LOCF_landmark ... lapply -> FUN -> coxVariableName -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Landmarking.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘Landmarking.Rmd’
--- re-building ‘how_to_use.Rmd’ using rmarkdown
Quitting from how_to_use.Rmd:82-96 [11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─Landmarking::fit_LOCF_landmark(...)
2. └─base::lapply(...)
3. └─Landmarking (local) FUN(X[[i]], ...)
4. └─Landmarking::fit_survival_model(...)
5. └─base::lapply(...)
6. └─Landmarking (local) FUN(X[[i]], ...)
7. ├─riskRegression::predictRisk(...)
8. └─riskRegression:::predictRisk.CauseSpecificCox(...)
9. ├─stats::predict(...)
10. └─riskRegression:::predict.CauseSpecificCox(...)
11. └─riskRegression:::compressData(...)
12. └─base::lapply(...)
13. └─riskRegression (local) FUN(X[[i]], ...)
14. └─riskRegression::coxVariableName(iO, model.frame = coxModelFrame(iO))
15. └─stats::delete.response(...)
16. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'how_to_use.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘how_to_use.Rmd’
SUMMARY: processing the following file failed:
‘how_to_use.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc