Last updated on 2026-07-29 09:55:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.6 | 12.41 | 314.89 | 327.30 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.6 | 9.39 | 228.14 | 237.53 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.6 | 23.00 | 454.95 | 477.95 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.6 | 202.00 | ERROR | |||
| r-devel-windows-x86_64 | 0.10.6 | 16.00 | 277.00 | 293.00 | OK | |
| r-patched-linux-x86_64 | 0.10.6 | 13.88 | 291.75 | 305.63 | OK | |
| r-release-linux-x86_64 | 0.10.6 | 11.88 | 294.42 | 306.30 | OK | |
| r-release-macos-arm64 | 0.10.6 | 3.00 | 80.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.10.6 | 10.00 | 357.00 | 367.00 | OK | |
| r-release-windows-x86_64 | 0.10.6 | 15.00 | 282.00 | 297.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.6 | OK | ||||
| r-oldrel-macos-x86_64 | 0.10.6 | 8.00 | 304.00 | 312.00 | OK | |
| r-oldrel-windows-x86_64 | 0.10.6 | 20.00 | 395.00 | 415.00 | OK |
Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘competingRisk.Rmd’ using rmarkdown
--- finished re-building ‘competingRisk.Rmd’
--- re-building ‘customizingpopTime.Rmd’ using rmarkdown
--- finished re-building ‘customizingpopTime.Rmd’
--- re-building ‘plotabsRisk.Rmd’ using rmarkdown
--- finished re-building ‘plotabsRisk.Rmd’
--- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown
Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `plot()`:
! `...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
---
Backtrace:
▆
1. ├─base::plot(...)
2. └─casebase:::plot.singleEventCB(...)
3. ├─base::do.call(...)
4. └─visreg (local) `<fn>`(...)
5. └─visreg:::finalize_visreg(v, plot, ...)
6. ├─base::plot(v, ...)
7. └─visreg:::plot.visreg(v, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
--- failed re-building ‘plotsmoothHazard.Rmd’
--- re-building ‘popTime.Rmd’ using rmarkdown
--- finished re-building ‘popTime.Rmd’
--- re-building ‘smoothHazard.Rmd’ using rmarkdown
Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `FUN()`:
! `...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
---
Backtrace:
▆
1. ├─base::plot(model4, hazard.params = list(alpha = 0.05))
2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05))
3. ├─base::do.call(...)
4. └─visreg (local) `<fn>`(...)
5. └─visreg:::finalize_visreg(v, plot, ...)
6. ├─base::plot(v, ...)
7. └─visreg:::plot.visreg_list(v, ...)
8. ├─base::structure(...)
9. └─base::lapply(x, plot, ...)
10. ├─base (local) FUN(X[[i]], ...)
11. └─visreg:::plot.visreg(X[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
--- failed re-building ‘smoothHazard.Rmd’
--- re-building ‘time-varying-covariates.Rmd’ using rmarkdown
--- finished re-building ‘time-varying-covariates.Rmd’
SUMMARY: processing the following files failed:
‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.10.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(casebase)
See example usage at http://sahirbhatnagar.com/casebase/
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> library(survival)
>
> test_check("casebase")
Saving _problems/test-plotSingleEventCB-39.R
[ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• GBM is not implemented (1): 'test-gbm.R:4:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plotSingleEventCB.R:39:5'): no error in plot method for singleEventCB objects - hazard function ──
Expected `inherits(outglm, "try-error")` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
[ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc