CRAN Package Check Results for Maintainer ‘Christian Huber <christian.domitian.huber at gmail.com>’

Last updated on 2025-06-18 18:01:09 CEST.

Package ERROR NOTE OK
smartsnp 1 2 10

Package smartsnp

Current CRAN status: ERROR: 1, NOTE: 2, OK: 10

Version: 1.1.0
Check: Rd files
Result: NOTE checkRd: (-1) read_packedancestrymap.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:7-11: Lost braces 7 | \item{snp_data}{snp_data}{File name read from working directory. | ^ checkRd: (-1) smart_mva.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:102-103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:106-109: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:110: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:115: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:117: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_mva.Rd:119: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_pca.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_pca.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_pca.Rd:64-67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permanova.Rd:71-73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permanova.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permanova.Rd:75-76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permanova.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permanova.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permanova.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:78-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:85-86: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) smart_permdisp.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavor: r-oldrel-macos-x86_64

Version: 1.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Converting_VCF_and_PLINK_formats.Rmd' using rmarkdown File figure/data_transformation_example_plot-1.png not found in resource path Error: processing vignette 'Converting_VCF_and_PLINK_formats.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'Converting_VCF_and_PLINK_formats.Rmd' --- re-building 'aDNA_smartpca_analysis.Rmd' using rmarkdown File figure/lazaridis_plot-1.png not found in resource path Error: processing vignette 'aDNA_smartpca_analysis.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'aDNA_smartpca_analysis.Rmd' --- re-building 'mallard_smartpca_analysis.Rmd' using rmarkdown File figure/pca_plot_mallard-1.png not found in resource path Error: processing vignette 'mallard_smartpca_analysis.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'mallard_smartpca_analysis.Rmd' SUMMARY: processing the following files failed: 'Converting_VCF_and_PLINK_formats.Rmd' 'aDNA_smartpca_analysis.Rmd' 'mallard_smartpca_analysis.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64