Last updated on 2025-06-19 23:49:51 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| CooccurrenceAffinity | 4 | 9 |
Current CRAN status: ERROR: 4, NOTE: 9
Version: 1.0
Check: Rd files
Result: NOTE
checkRd: (-1) CovrgPlot.Rd:28: Lost braces; missing escapes or markup?
28 | \item{plotCI}{a vector of up to 4 numbers out of the set {1,2,3,4}, corresponding to which
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘CooccurrenceAffinity-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: affinity
> ### Title: Computes alpha, probability, expected co-occurence, median
> ### interval, various confidence intervals, other indices of affinity,
> ### etc.
> ### Aliases: affinity
>
> ### ** Examples
>
> # when you have a binary presence absence occurrence data
> # -------------------------------------------------------
>
> if(requireNamespace("cooccur", quietly = TRUE)) {
+ data(finches, package = "cooccur")
+ } else {
+ message("The cooccur package is not installed.
+ You can install it with install.packages('cooccur').")
+ }
The cooccur package is not installed.
You can install it with install.packages('cooccur').
>
> data(finches, package = "cooccur")
Error in find.package(package, lib.loc, verbose = verbose) :
there is no package called ‘cooccur’
Calls: data -> find.package
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘CooccurrenceAffinity-Ex.R’ failed
The error most likely occurred in:
> ### Name: affinity
> ### Title: Computes alpha, probability, expected co-occurence, median
> ### interval, various confidence intervals, other indices of affinity,
> ### etc.
> ### Aliases: affinity
>
> ### ** Examples
>
> # when you have a binary presence absence occurrence data
> # -------------------------------------------------------
>
> if(requireNamespace("cooccur", quietly = TRUE)) {
+ data(finches, package = "cooccur")
+ } else {
+ message("The cooccur package is not installed.
+ You can install it with install.packages('cooccur').")
+ }
The cooccur package is not installed.
You can install it with install.packages('cooccur').
>
> data(finches, package = "cooccur")
Error in find.package(package, lib.loc, verbose = verbose) :
there is no package called ‘cooccur’
Calls: data -> find.package
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘CooccurrenceAffinity-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: affinity
> ### Title: Computes alpha, probability, expected co-occurence, median
> ### interval, various confidence intervals, other indices of affinity,
> ### etc.
> ### Aliases: affinity
>
> ### ** Examples
>
> # when you have a binary presence absence occurrence data
> # -------------------------------------------------------
>
> if(requireNamespace("cooccur", quietly = TRUE)) {
+ data(finches, package = "cooccur")
+ } else {
+ message("The cooccur package is not installed.
+ You can install it with install.packages('cooccur').")
+ }
The cooccur package is not installed.
You can install it with install.packages('cooccur').
>
> data(finches, package = "cooccur")
Error in find.package(package, lib.loc, verbose = verbose) :
there is no package called ‘cooccur’
Calls: data -> find.package
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
CovrgPlot 4.289 0.055 5.077
Flavor: r-patched-linux-x86_64