CRAN Package Check Results for Package scNPM

Last updated on 2026-10-15 17:51:20 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-fedora-clang 1.0.6 30.00 69.43 99.43 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.6 46.00 68.52 114.52 OK
r-devel-windows-x86_64 1.0.6 68.00 248.00 316.00 OK
r-release-macos-arm64 1.0.6 12.00 28.00 40.00 OK
r-release-macos-x86_64 1.0.6 42.00 159.00 201.00 ERROR
r-oldrel-macos-arm64 1.0.6 14.00 35.00 49.00 OK
r-oldrel-macos-x86_64 1.0.6 40.00 137.00 177.00 ERROR

Additional issues

BLIS MKL

Check Details

Version: 1.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(scNPM) > > test_check("scNPM") OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). Saving _problems/test-staged-fdr-158.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 537 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-staged-fdr.R:158:5'): invalid stage budgets and insufficient stability cannot produce discoveries ── Expected `staged_run(a)` to throw a error. Backtrace: ▆ 1. ├─scNPM (local) staged_single_thread(...) at test-staged-fdr.R:156:3 2. │ └─base::force(code) at test-staged-fdr.R:3:47 3. └─testthat::expect_error(staged_run(a), "Matching did not stabilize") at test-staged-fdr.R:158:5 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 537 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/22s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(scNPM) > > test_check("scNPM") Saving _problems/test-staged-fdr-158.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 537 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-staged-fdr.R:158:5'): invalid stage budgets and insufficient stability cannot produce discoveries ── Expected `staged_run(a)` to throw a error. Backtrace: ▆ 1. ├─scNPM (local) staged_single_thread(...) at test-staged-fdr.R:156:3 2. │ └─base::force(code) at test-staged-fdr.R:3:47 3. └─testthat::expect_error(staged_run(a), "Matching did not stabilize") at test-staged-fdr.R:158:5 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 537 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-x86_64

Version: 1.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/21s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(scNPM) > > test_check("scNPM") Saving _problems/test-staged-fdr-158.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 537 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-staged-fdr.R:158:5'): invalid stage budgets and insufficient stability cannot produce discoveries ── Expected `staged_run(a)` to throw a error. Backtrace: ▆ 1. ├─scNPM (local) staged_single_thread(...) at test-staged-fdr.R:156:3 2. │ └─base::force(code) at test-staged-fdr.R:3:47 3. └─testthat::expect_error(staged_run(a), "Matching did not stabilize") at test-staged-fdr.R:158:5 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 537 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64