Last updated on 2026-03-19 22:53:27 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 7.50 | 69.82 | 77.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 5.25 | 43.02 | 48.27 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 12.00 | 104.01 | 116.01 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 13.00 | 105.74 | 118.74 | OK | |
| r-devel-macos-arm64 | 0.2.4 | 2.00 | 18.00 | 20.00 | OK | |
| r-devel-windows-x86_64 | 0.2.4 | 9.00 | 93.00 | 102.00 | OK | |
| r-patched-linux-x86_64 | 0.2.4 | 7.62 | 60.16 | 67.78 | OK | |
| r-release-linux-x86_64 | 0.2.4 | 6.35 | 59.44 | 65.79 | OK | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 5.00 | 62.00 | 67.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 8.00 | 91.00 | 99.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 5.00 | 52.00 | 57.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 12.00 | 105.00 | 117.00 | OK |
Version: 0.2.4
Check: examples
Result: ERROR
Running examples in ‘snSMART-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: group_seq
> ### Title: BJSM method for interim analysis and final analysis of group
> ### sequential trial design
> ### Aliases: group_seq print.summary.group_seq print.group_seq
>
> ### ** Examples
>
> mydata <- groupseqDATA_look1
>
> result1 <- group_seq(
+ data = mydata, interim = TRUE, drop_threshold_pair = c(0.5, 0.4),
+ prior_dist = c("beta", "beta", "pareto"), pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6),
+ beta_prior = c(1.6, 0.4, 3, 1), MCMC_SAMPLE = 6000, n.adapt = 1000, n_MCMC_chain = 1
+ )
Interim Analysis Outcome:
Threshold tau_l is set to:
0.5
Threshold psi_l is set to:
0.4
Step 1: Arm C's interim posterior probability of having the greatest response is bigger than threshold
0.5
Step 2: Arm A's interim posterior probability of having the lowest response is higher
Arm A is dropped
>
> summary(result1)
Arm A is dropped
Iterations = 1101:7100
Thinning interval = 1
Number of chains = 1
Sample size per chain = 6000
1. Empirical mean and standard deviation for each variable,
plus standard error of the mean:
Mean SD Naive SE Time-series SE
beta[1] 0.777 0.2150 0.00278 0.00644
beta[2] 1.246 0.2883 0.00372 0.01093
beta[3] 0.695 0.2787 0.00360 0.00781
beta[4] 1.350 0.3187 0.00411 0.00897
beta[5] 0.838 0.1957 0.00253 0.00697
beta[6] 1.208 0.2051 0.00265 0.00651
pi[1] 0.290 0.0899 0.00116 0.00182
pi[2] 0.423 0.0838 0.00108 0.00178
pi[3] 0.572 0.1093 0.00141 0.00256
2. Quantiles for each variable:
2.5% 25% 50% 75% 97.5%
beta[1] 0.281 0.634 0.839 0.966 1.000
beta[2] 1.005 1.064 1.153 1.320 2.051
beta[3] 0.101 0.479 0.770 0.953 1.000
beta[4] 1.011 1.115 1.262 1.504 2.182
beta[5] 0.307 0.753 0.920 0.987 1.000
beta[6] 1.005 1.063 1.151 1.287 1.736
pi[1] 0.135 0.226 0.284 0.347 0.479
pi[2] 0.263 0.366 0.422 0.479 0.590
pi[3] 0.353 0.497 0.574 0.648 0.779
>
>
> mydata <- groupseqDATA_full
> result2 <- group_seq(
+ data = mydata, interim = FALSE, prior_dist = c("beta", "beta", "pareto"),
+ pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6),
+ beta_prior = c(1.6, 0.4, 3, 1), MCMC_SAMPLE = 6000, n.adapt = 1000,
+ n_MCMC_chain = 1, ci = 0.95, DTR = TRUE
+ )
Error in update.jags(model, n.iter, ...) : Error in node beta[5]
Slicer stuck at value with infinite density
Calls: group_seq ... do.call -> <Anonymous> -> jags.samples -> update.jags
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc