cubar 0.6.0
- Add util functions (
codon_optimize
&
codon_diff
)
- Fix url failure of gtRNAdb, which caused remove of cubar from cran
:(
cubar 0.5.1
- fix a bug in
get_cscg
that caused an error when the
input codon frequency matrix has a single row.
- finish unit tests for all functions and internal data.
cubar 0.5.0
- fixed a bug in
est_trna_weight
. Now zero w values were
replaced with geometric mean (rather than the arithmetic mean) of
non-zero w values.
- fixed unexpected warnings in
est_optimal_codons
.
- fixed bugs that update input codon table due to
data.table
reference semantics.
- added a new vignette explaining the mathematical details of
implementation.
cubar 0.4.2
- adjust formatting
- fix a typo in
get_enc
code
cubar 0.4.1
- New vignette for mitochondrial codon usage analysis.
- Fix a bug when in
get_enc
for non-standard genetic
code.
cubar 0.4.0
cubar 0.3.2