Methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.
| Version: | 2.0.12 |
| Depends: | ape (≥ 3.0-6), R (≥ 2.15.0), phytools (≥ 1.5-1) |
| Imports: | MASS, mvtnorm, subplex, deSolve (≥ 1.7), digest, Rcpp (≥ 0.11.0), coda, ncbit, colorspace, methods |
| LinkingTo: | Rcpp |
| Suggests: | TreeSim |
| Published: | 2026-08-31 |
| DOI: | 10.32614/CRAN.package.geiger |
| Author: | Luke Harmon [aut, cre], Matthew Pennell [aut], Chad Brock [aut], Joseph Brown [aut], Wendell Challenger [aut], Jon Eastman [aut], Rich FitzJohn [aut], Rich Glor [aut], Gene Hunt [aut], Liam Revell [aut], Graham Slater [aut], Josef Uyeda [aut], Jason Weir [aut], CRAN team [ctb] (corrections in 2022) |
| Maintainer: | Luke Harmon <lukeh at uidaho.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/mwpennell/geiger-v2 |
| NeedsCompilation: | yes |
| Citation: | geiger citation info |
| Materials: | README, ChangeLog |
| In views: | Phylogenetics |
| CRAN checks: | geiger results |
| Reference manual: | geiger.html , geiger.pdf |
| Package source: | geiger_2.0.12.tar.gz |
| Windows binaries: | r-devel: geiger_2.0.12.zip, r-release: geiger_2.0.11.zip, r-oldrel: geiger_2.0.11.zip |
| macOS binaries: | r-release (arm64): geiger_2.0.12.tgz, r-oldrel (arm64): geiger_2.0.12.tgz, r-release (x86_64): geiger_2.0.12.tgz, r-oldrel (x86_64): geiger_2.0.12.tgz |
| Old sources: | geiger archive |
| Reverse depends: | bayou, convevol, OUwie, surface, TreeSim, windex |
| Reverse imports: | deepSTRAPP, FishPhyloMaker, hillR, hisse, markophylo, nichevol, nodeSub, pmc, PNC, ppgm, ratematrix, secsse, sensiPhy, treats, treedata.table |
| Reverse suggests: | cauphy, diversitree, fishtree, pcmabc, phytools, RNeXML, treestats |
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