Last updated on 2026-11-09 12:53:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 6.74 | 136.73 | 143.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 5.15 | 103.95 | 109.10 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 5.00 | 100.86 | 105.86 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 101.36 | OK | |||
| r-devel-windows-x86_64 | 0.1.1 | 10.00 | 171.00 | 181.00 | OK | |
| r-patched-linux-x86_64 | 0.1.1 | OK | ||||
| r-release-linux-x86_64 | 0.1.1 | 4.86 | 127.33 | 132.19 | OK | |
| r-release-macos-arm64 | 0.1.1 | 2.00 | 39.00 | 41.00 | OK | |
| r-release-macos-x86_64 | 0.1.1 | 5.00 | 139.00 | 144.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 11.00 | 173.00 | 184.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 2.00 | 43.00 | 45.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 5.00 | 138.00 | 143.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 14.00 | 202.00 | 216.00 | OK |
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/46s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biocohort)
biocohort version 0.1.1
Cohort Objects for Subjects and Samples in Omics Studies
Documentation: https://www.samuelbharti.com/biocohort/
>
> test_check("biocohort")
1 path not found. See the exists column.
1 path not found. See the exists column.
1 path not found. See the exists column.
1 path not found. See the exists column.
1 path not found. See the exists column.
Cleared cache; re-run load_analyses() or translate() as needed.
-- TranslationResult (rat -> human, backend: custom)
* input: 4
v mapped: 2 (50%)
x unmapped: 2
! multi: 1
-- TranslationResult (rat -> human, backend: custom)
* input: 4
v mapped: 2 (50%)
x unmapped: 2
! multi: 1
Saving _problems/test-load-324.R
v Translated 1 analysis: "expr".
v Translated 2 analyses: "somatic" and "expr".
v Translated 2 analyses: "somatic" and "expr".
v Translated 2 analyses: "somatic" and "expr".
v Translated 1 analysis: "expr".
v Translated 1 analysis: "expr".
v Translated 1 analysis: "expr".
v Translated 1 analysis: "expr".
v Translated 1 analysis: "somatic".
v Translated 2 analyses: "somatic" and "expr".
v Translated 2 analyses: "somatic" and "expr".
v Translated 2 analyses: "somatic" and "expr".
-- Cohort
* 2 subjects (2 rat)
* 4 samples (4 wes)
-- Cohort
* 2 subjects (2 rat)
* 4 samples (4 wes)
Cleared cache; re-run load_analyses() or translate() as needed.
[ FAIL 1 | WARN 1 | SKIP 1 | PASS 784 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• not a source tree (1): 'test-package.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-load.R:321:3'): load_analysis uses the default parquet reader from the format ──
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─arrow::write_parquet(...) at test-load.R:321:3
2. ├─ParquetFileWriter$create(...)
3. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
4. └─ParquetWriterProperties$create(...)
5. └─arrow:::parquet___WriterProperties___Builder__create()
[ FAIL 1 | WARN 1 | SKIP 1 | PASS 784 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc