Last updated on 2026-03-12 22:50:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 53.52 | 465.30 | 518.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 45.01 | 327.08 | 372.09 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 159.00 | 797.72 | 956.72 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 157.00 | 757.10 | 914.10 | OK | |
| r-devel-macos-arm64 | 0.2.0 | 4.00 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.0 | 77.00 | 420.00 | 497.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 48.86 | 449.82 | 498.68 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 47.33 | 446.41 | 493.74 | OK | |
| r-release-macos-arm64 | 0.2.0 | 16.00 | 91.00 | 107.00 | ERROR | |
| r-release-macos-x86_64 | 0.2.0 | 53.00 | 253.00 | 306.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 77.00 | 417.00 | 494.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 6.00 | 8.00 | 14.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.2.0 | 59.00 | 304.00 | 363.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 68.00 | 547.00 | 615.00 | OK |
Version: 0.2.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘ProFAST’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘coFAST-Ex.R’ failed
The error most likely occurred in:
> ### Name: diagnostic.cor.eigs
> ### Title: Determine the dimension of low dimensional embedding
> ### Aliases: diagnostic.cor.eigs diagnostic.cor.eigs.default
> ### diagnostic.cor.eigs.Seurat
>
> ### ** Examples
>
> n <- 100
> p <- 50
> d <- 15
> object <- matrix(rnorm(n*d), n, d) %*% matrix(rnorm(d*p), d, p)
> diagnostic.cor.eigs(object, n.sims=2)
Warning in diagnostic.cor.eigs.default(object, n.sims = 2) :
q_max is not less than the number of columns of X. Set it as ncol(X) - 1
Warning in irlba::irlba(A = Y/sqrt(n), nv = q_max) :
You're computing too large a percentage of total singular values, use a standard svd instead.
Progress: ──────────────────────────────────────────────────────────────── 100%
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: irlba::irlba(A = X1/sqrt(n), nv = q_max)
2: ...furrr_fn(...)
3: .f(.x[[i]], ...)
4: .Primitive(".Call")(list(name = "map_impl", address = <pointer: 0x6000008d1dc0>, dll = list(name = "purrr", path = "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/purrr/libs/purrr.so", dynamicLookup = FALSE, handle = <pointer: 0x9fac2230>, info = <pointer: 0x600002cca0a0>, forceSymbols = FALSE), numParameters = 6L), <environment>, "list", FALSE, 1L, NULL, 1L)
5: call_with_cleanup(map_impl, environment(), .type, .progress, n, names, i)
6: withCallingHandlers(expr, error = function(cnd) { if (i == 0L) { } else { message <- c(i = "In index: {i}.") if (!is.null(names) && !is.na(names[[i]]) && names[[i]] != "") { name <- names[[i]] message <- c(message, i = "With name: {name}.") } else { name <- NULL } cli::cli_abort(message, location = i, name = name, parent = cnd, call = error_call, class = "purrr_error_indexed") }})
7: with_indexed_errors(i = i, names = names, error_call = .purrr_error_call, call_with_cleanup(map_impl, environment(), .type, .progress, n, names, i))
8: map_("list", .x, .f, ..., .progress = .progress)
9: (function (.x, .f, ..., .progress = FALSE) { map_("list", .x, .f, ..., .progress = .progress)})(.x = 2L, .f = function (...) {
Traceback:
1: irlba::irlba(A = X1/sqrt(n), nv = q_max)
2: ...furrr_fn(...)
{ ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], 3: .f(.x[[i]], ...)
4: .Primitive(".Call")(list(name = "map_impl", address = <pointer: 0x6000008d1dc0>, envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) } } ...furrr_out <- ...furrr_fn(...) ...furrr_out}, n = 100L, p = 50L)
10: do.call(...furrr_map_fn, args)
dll = list(name = "purrr", path = "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/purrr/libs/purrr.so", dynamicLookup = FALSE, handle = <pointer: 0x9fac2230>, info = <pointer: 0x600002cca0a0>, forceSymbols = FALSE), numParameters = 6L), <environment>, "list", FALSE, 1L, NULL, 1L)11: eval(quote({ { future_globals_max_size <- getOption("future.globals.maxSize") if (!identical(future_globals_max_size, ...furrr_globals_max_size)) { options(future.globals.maxSize = ...furrr_globals_max_size) on.exit(options(future.globals.maxSize = future_globals_max_size),
5: call_with_cleanup(map_impl, environment(), .type, .progress, n, names, i)
6: withCallingHandlers(expr, error = function(cnd) { if (i == 0L) { } else { message <- c(i = "In index: {i}.") if (!is.null(names) && !is.na(names[[i]]) && names[[i]] != add = TRUE) } { ...furrr_chunk_x <- ...furrr_chunk_args { ...furrr_chunk_seeds_env <- environment() ...furrr_chunk_seeds_env[["i"]] <- 1L "") { name <- names[[i]] message <- c(message, i = "With name: {name}.") } else { } { ...furrr_progress <- TRUE tryCatch(expr = { ...furrr_progress_con <- file(...furrr_progress_file, name <- NULL } cli::cli_abort(message, location = i, name = name, parent = cnd, call = error_call, class = "purrr_error_indexed") } open = "a") on.exit(close(...furrr_progress_con), add = TRUE) }, error = function(cnd) { ...furrr_progress <<- FALSE }) } ...furrr_fn_wrapper <- function(...) {})
7: with_indexed_errors(i = i, names = names, error_call = .purrr_error_call, call_with_cleanup(map_impl, environment(), .type, .progress, { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], n, names, i))
8: map_("list", .x, .f, ..., .progress = .progress)
envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) } } ...furrr_out <- ...furrr_fn(...) 9: (function (.x, .f, ..., .progress = FALSE) { map_("list", .x, .f, ..., .progress = .progress)})(.x = 1L, .f = function (...) { { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + ...furrr_out } args <- list(.x = ...furrr_chunk_x, .f = ...furrr_fn_wrapper) args <- c(args, ...furrr_dots) do.call(...furrr_map_fn, args) 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) } }}), new.env())
12: } } ...furrr_out <- ...furrr_fn(...) ...furrr_out}, n = 100L, p = 50L)eval(quote({ { future_globals_max_size <- getOption("future.globals.maxSize") if (!identical(future_globals_max_size, ...furrr_globals_max_size)) { options(future.globals.maxSize = ...furrr_globals_max_size) on.exit(options(future.globals.maxSize = future_globals_max_size), add = TRUE) } { ...furrr_chunk_x <- ...furrr_chunk_args
10: do.call(...furrr_map_fn, args)
11: eval(quote({ { future_globals_max_size <- getOption("future.globals.maxSize") if (!identical(future_globals_max_size, ...furrr_globals_max_size)) { options(future.globals.maxSize = ...furrr_globals_max_size) on.exit(options(future.globals.maxSize = future_globals_max_size), add = TRUE) { ...furrr_chunk_seeds_env <- environment() ...furrr_chunk_seeds_env[["i"]] <- 1L } { } { ...furrr_chunk_x <- ...furrr_chunk_args { ...furrr_chunk_seeds_env <- environment() ...furrr_progress <- TRUE tryCatch(expr = { ...furrr_progress_con <- file(...furrr_progress_file, open = "a") on.exit(close(...furrr_progress_con), add = TRUE) ...furrr_chunk_seeds_env[["i"]] <- 1L } { ...furrr_progress <- TRUE tryCatch(expr = { }, error = function(cnd) { ...furrr_progress <<- FALSE }) } ...furrr_fn_wrapper <- function(...) { ...furrr_progress_con <- file(...furrr_progress_file, open = "a") on.exit(close(...furrr_progress_con), add = TRUE) }, error = function(cnd) { ...furrr_progress <<- FALSE { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], }) } ...furrr_fn_wrapper <- function(...) { { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) } } ...furrr_out <- ...furrr_fn(...) sep = "") }, silent = TRUE) } } ...furrr_out <- ...furrr_fn(...) ...furrr_out ...furrr_out } args <- list(.x = ...furrr_chunk_x, .f = ...furrr_fn_wrapper) args <- c(args, ...furrr_dots) do.call(...furrr_map_fn, args) } }}), new.env())
12: } args <- list(.x = ...furrr_chunk_x, .f = ...furrr_fn_wrapper)eval(quote({ { future_globals_max_size <- getOption("future.globals.maxSize") if (!identical(future_globals_max_size, ...furrr_globals_max_size)) { options(future.globals.maxSize = ...furrr_globals_max_size) args <- c(args, ...furrr_dots) do.call(...furrr_map_fn, args) } }}), new.env())
13: on.exit(options(future.globals.maxSize = future_globals_max_size), add = TRUE) } { ...furrr_chunk_x <- ...furrr_chunk_args {eval(expr, p)
14: eval(expr, p)
15: eval.parent(substitute(eval(quote(expr), envir)))
16: ...furrr_chunk_seeds_env <- environment() ...furrr_chunk_seeds_env[["i"]] <- 1L } { ...furrr_progress <- TRUElocal({ { future_globals_max_size <- getOption("future.globals.maxSize") if (!identical(future_globals_max_size, ...furrr_globals_max_size)) { options(future.globals.maxSize = ...furrr_globals_max_size) tryCatch(expr = { ...furrr_progress_con <- file(...furrr_progress_file, open = "a") on.exit(close(...furrr_progress_con), add = TRUE) }, error = function(cnd) { ...furrr_progress <<- FALSE }) } ...furrr_fn_wrapper <- function(...) { { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] on.exit(options(future.globals.maxSize = future_globals_max_size), add = TRUE) } { ...furrr_chunk_x <- ...furrr_chunk_args { ...furrr_chunk_seeds_env <- environment() ...furrr_chunk_seeds_env[["i"]] <- 1L } { ...furrr_progress <- TRUE tryCatch(expr = { ...furrr_progress_con <- file(...furrr_progress_file, ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) open = "a") on.exit(close(...furrr_progress_con), add = TRUE) }, error = function(cnd) { ...furrr_progress <<- FALSE }) } ...furrr_fn_wrapper <- function(...) { { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + 1L } } ...furrr_out <- ...furrr_fn(...) ...furrr_out } args <- list(.x = ...furrr_chunk_x, .f = ...furrr_fn_wrapper) args <- c(args, ...furrr_dots) do.call(...furrr_map_fn, args) } }}), new.env())
13: assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) } }eval(expr, p)
14: eval(expr, p)
...furrr_out <- ...furrr_fn(...) ...furrr_out } args <- list(.x = ...furrr_chunk_x, .f = ...furrr_fn_wrapper) args <- c(args, ...furrr_dots) do.call(...furrr_map_fn, args) }15: eval.parent(substitute(eval(quote(expr), envir)))
16: local({ }})
17: eval(expr, envir = globalenv()) { future_globals_max_size <- getOption("future.globals.maxSize")
18: eval(expr, envir = globalenv())
19: if (!identical(future_globals_max_size, ...furrr_globals_max_size)) { options(future.globals.maxSize = ...furrr_globals_max_size) on.exit(options(future.globals.maxSize = future_globals_max_size), add = TRUE) } { ...furrr_chunk_x <- ...furrr_chunk_args { ...furrr_chunk_seeds_env <- environment() ...furrr_chunk_seeds_env[["i"]] <- 1LwithVisible({ eval(expr, envir = globalenv())})
20: } { ...furrr_progress <- TRUE tryCatch(expr = { ...furrr_progress_con <- file(...furrr_progress_file, withCallingHandlers({ ...future.value <- withVisible({ eval(expr, envir = globalenv()) }) seed <- globalenv()[[".Random.seed"]] open = "a") on.exit(close(...furrr_progress_con), add = TRUE) }, error = function(cnd) { ...furrr_progress <<- FALSE }) FutureResult(value = ...future.value[["value"]], visible = ...future.value[["visible"]], conditions = ...future.conditions, rng = !identical(seed, ...future.rng), seed = seed, uuid = uuid, misuseGlobalEnv = if (checkGlobalenv) list(added = diff_globalenv(...future.globalenv.names)) else NULL, misuseConnections = if (checkConnections) } ...furrr_fn_wrapper <- function(...) { { ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]] ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i + 1L assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]], envir = globalenv(), inherits = FALSE) } { if (...furrr_progress) { diff_connections(get_connections(details = isTRUE(attr(checkConnections, "details", exact = TRUE))), ...future.connections) else NULL, misuseDevices = if (checkDevices) diff_devices(...future.devices, base::.Devices) else NULL, misuseDefaultDevice = ...future.option.defaultDevice, started = ...future.startTime)}, condition = onEvalCondition)
21: tryCatchList(expr, classes, parentenv, handlers)
try(expr = { cat("+", file = ...furrr_progress_con, sep = "") }, silent = TRUE) }22: tryCatch({ withCallingHandlers({ ...future.value <- withVisible({ eval(expr, envir = globalenv()) } ...furrr_out <- ...furrr_fn(...) ...furrr_out } args <- list(.x = ...furrr_chunk_x, .f = ...furrr_fn_wrapper) }) seed <- globalenv()[[".Random.seed"]] FutureResult(value = ...future.value[["value"]], visible = ...future.value[["visible"]], conditions = ...future.conditions, rng = !identical(seed, ...future.rng), seed = seed, uuid = uuid, misuseGlobalEnv = if (checkGlobalenv) list(added = diff_globalenv(...future.globalenv.names)) else NULL, misuseConnections = if (checkConnections) diff_connections(get_connections(details = isTRUE(attr(checkConnections, "details", exact = TRUE))), ...future.connections) args <- c(args, ...furrr_dots) do.call(...furrr_map_fn, args) } }}) else NULL, misuseDevices = if (checkDevices) diff_devices(...future.devices, base::.Devices) else NULL, misuseDefaultDevice = ...future.option.defaultDevice, started = ...future.startTime) }, condition = onEvalCondition)
17: eval(expr, envir = globalenv())
18: }, finally = { setTimeLimit(cpu = Inf, elapsed = Inf, transient = FALSE)})
23: eval(expr, envir = globalenv())
19: withVisible({ eval(expr, envir = globalenv())})
20: withCallingHandlers({doTryCatch(return(expr), name, parentenv, handler)
24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
25: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) ...future.value <- withVisible({ eval(expr, envir = globalenv()) }) seed <- globalenv()[[".Random.seed"]] FutureResult(value = ...future.value[["value"]], visible = ...future.value[["visible"]], conditions = ...future.conditions, rng = !identical(seed, ...future.rng), seed = seed, uuid = uuid, misuseGlobalEnv = if (checkGlobalenv) list(added = diff_globalenv(...future.globalenv.names)) else NULL, misuseConnections = if (checkConnections) diff_connections(get_connections(details = isTRUE(attr(checkConnections, "details", exact = TRUE))), ...future.connections) else NULL, misuseDevices = if (checkDevices)
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: diff_devices(...future.devices, base::.Devices) else NULL, misuseDefaultDevice = ...future.option.defaultDevice, started = ...future.startTime)}, condition = onEvalCondition)
tryCatch({ tryCatch({ withCallingHandlers({ ...future.value <- withVisible({ eval(expr, envir = globalenv()) }) seed <- globalenv()[[".Random.seed"]]21: tryCatchList(expr, classes, parentenv, handlers)
22: tryCatch({ withCallingHandlers({ ...future.value <- withVisible({ eval(expr, envir = globalenv()) }) FutureResult(value = ...future.value[["value"]], visible = ...future.value[["visible"]], conditions = ...future.conditions, rng = !identical(seed, ...future.rng), seed = seed, uuid = uuid, misuseGlobalEnv = if (checkGlobalenv) list(added = diff_globalenv(...future.globalenv.names)) else NULL, misuseConnections = if (checkConnections) diff_connections(get_connections(details = isTRUE(attr(checkConnections, "details", exact = TRUE))), ...future.connections) else NULL, misuseDevices = if (checkDevices) diff_devices(...future.devices, base::.Devices) else NULL, misuseDefaultDevice = ...future.option.defaultDevice, seed <- globalenv()[[".Random.seed"]] FutureResult(value = ...future.value[["value"]], visible = ...future.value[["visible"]], conditions = ...future.conditions, rng = !identical(seed, ...future.rng), seed = seed, uuid = uuid, misuseGlobalEnv = if (checkGlobalenv) list(added = diff_globalenv(...future.globalenv.names)) else NULL, misuseConnections = if (checkConnections) diff_connections(get_connections(details = isTRUE(attr(checkConnections, "details", exact = TRUE))), ...future.connections) else NULL, misuseDevices = if (checkDevices) started = ...future.startTime) }, condition = onEvalCondition) }, finally = { setTimeLimit(cpu = Inf, elapsed = Inf, transient = FALSE) }) diff_devices(...future.devices, base::.Devices) else NULL, misuseDefaultDevice = ...future.option.defaultDevice, started = ...future.startTime) }, condition = onEvalCondition)}, finally = {}, interrupt = onEvalErrorOrInterrupt, error = onEvalErrorOrInterrupt)
30: evalFutureInternal(data)
setTimeLimit(cpu = Inf, elapsed = Inf, transient = FALSE)})
23: doTryCatch(return(expr), name, parentenv, handler)31: doTryCatch(return(expr), name, parentenv, handler)
32: tryCatchOne(expr, names, parentenv, handlers[[1L]])
24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
25:
33: tryCatchList(expr, classes, parentenv, handlers)
34: tryCatch({ evalFutureInternal(data)tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: tryCatch({ tryCatch({ withCallingHandlers({ ...future.value <- withVisible({}, error = function(ex) { msg <- sprintf("future::evalFuture() failed on %s (pid %s) at %s", Sys.info()[["nodename"]], Sys.getpid(), format(Sys.time(), "%FT%T")) if (!requireNamespace("future")) { msg <- sprintf("%s. Package 'future' is not available (worker library path: %s)", eval(expr, envir = globalenv()) }) seed <- globalenv()[[".Random.seed"]] FutureResult(value = ...future.value[["value"]], visible = ...future.value[["visible"]], conditions = ...future.conditions, rng = !identical(seed, ...future.rng), seed = seed, uuid = uuid, misuseGlobalEnv = if (checkGlobalenv) list(added = diff_globalenv(...future.globalenv.names)) else NULL, misuseConnections = if (checkConnections) diff_connections(get_connections(details = isTRUE(attr(checkConnections, "details", exact = TRUE))), ...future.connections) else NULL, misuseDevices = if (checkDevices) msg, paste(sQuote(.libPaths()), collapse = ", ")) } else { ns <- getNamespace("future") if (!exists("evalFutureInternal", mode = "function", envir = ns, inherits = FALSE)) { diff_devices(...future.devices, base::.Devices) else NULL, misuseDefaultDevice = ...future.option.defaultDevice, started = ...future.startTime) }, condition = onEvalCondition) }, finally = { msg <- sprintf("%s. Package 'future' version %s is too old. Please update and retry", msg, packageVersion("future")) } else { msg <- sprintf("%s. Using package 'future' v%s", msg, packageVersion("future")) setTimeLimit(cpu = Inf, elapsed = Inf, transient = FALSE) })}, interrupt = onEvalErrorOrInterrupt, error = onEvalErrorOrInterrupt)
30: evalFutureInternal(data)
31: doTryCatch(return(expr), name, parentenv, handler)
32: tryCatchOne(expr, names, parentenv, handlers[[1L]])
33: tryCatchList(expr, classes, parentenv, handlers) } } msg <- sprintf("%s. Possible other reasons: %s", msg, conditionMessage(ex)) call <- conditionCall(ex) if (!is.null(call)) {
34: tryCatch({ evalFutureInternal(data)}, error = function(ex) { call <- deparse(call, width.cutoff = 500L) call <- paste(call, collapse = " -> ") msg <- sprintf("%s [in %s]", msg, call) } ex <- simpleError(msg) class(ex) <- c("FutureLaunchError", "FutureError", class(ex)) ex msg <- sprintf("future::evalFuture() failed on %s (pid %s) at %s", Sys.info()[["nodename"]], Sys.getpid(), format(Sys.time(), "%FT%T")) if (!requireNamespace("future")) { msg <- sprintf("%s. Package 'future' is not available (worker library path: %s)", })
35: evalFuture(data)
msg, paste(sQuote(.libPaths()), collapse = ", ")) } else { ns <- getNamespace("future") if (!exists("evalFutureInternal", mode = "function", 36: eval(expr, env)
37: doTryCatch(return(expr), name, parentenv, handler) envir = ns, inherits = FALSE)) { msg <- sprintf("%s. Package 'future' version %s is too old. Please update and retry", msg, packageVersion("future")) } else {
38: tryCatchOne(expr, names, parentenv, handlers[[1L]])
39: tryCatchList(expr, classes, parentenv, handlers)
40: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { msg <- sprintf("%s. Using package 'future' v%s", msg, packageVersion("future")) } } msg <- sprintf("%s. Possible other reasons: %s", msg, conditionMessage(ex)) call <- conditionCall(ex) if (!is.null(call)) { call <- deparse(call, width.cutoff = 500L) call <- paste(call, collapse = " -> ") msg <- sprintf("%s [in %s]", msg, call) } ex <- simpleError(msg) class(ex) <- c("FutureLaunchError", "FutureError", class(ex)) ex})
35: evalFuture(data)
if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) 36: eval(expr, env)
37: doTryCatch(return(expr), name, parentenv, handler)
38: tryCatchOne(expr, names, parentenv, handlers[[1L]])
39: tryCatchList(expr, classes, parentenv, handlers)
40: tryCatch(expr, error = function(e) { w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e)) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") }})
41: try(eval(expr, env), silent = TRUE)
42: serialize(what, NULL, xdr = FALSE)
43: else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile)sendMaster(try(eval(expr, env), silent = TRUE), FALSE)
44: mcparallel(evalFuture(data))
45: (function() { .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
oopts <- options(mc.cores = NULL) on.exit(options(oopts)) mcparallel(evalFuture(data))})()
41: try(eval(expr, env), silent = TRUE)
42: serialize(what, NULL, xdr = FALSE)46: launchFuture.MulticoreFutureBackend(backend, future = future)
47: launchFuture(backend, future = future)
43: sendMaster(try(eval(expr, env), silent = TRUE), FALSE)
44:
48: doTryCatch(return(expr), name, parentenv, handler)
49: mcparallel(evalFuture(data))
45: (function() { oopts <- options(mc.cores = NULL) on.exit(options(oopts)) mcparallel(evalFuture(data))})()
46: launchFuture.MulticoreFutureBackend(backend, future = future)
47: launchFuture(backend, future = future)
tryCatchOne(expr, names, parentenv, handlers[[1L]])
50: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
51: doTryCatch(return(expr), name, parentenv, handler)
52: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
53: 48: doTryCatch(return(expr), name, parentenv, handler)
49: tryCatchOne(expr, names, parentenv, handlers[[1L]])
50: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
51: doTryCatch(return(expr), name, parentenv, handler)
52: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])tryCatchList(expr, classes, parentenv, handlers)
54: tryCatch({ launchFuture(backend, future = future)
53: tryCatchList(expr, classes, parentenv, handlers)
54: tryCatch({ launchFuture(backend, future = future)}, FutureError = function(ex) { future[["state"]] <- "failed" stop(ex)}, error = function(ex) { msg <- conditionMessage(ex) label <- sQuoteLabel(future) msg <- sprintf("Caught an unexpected error of class %s when trying to launch future (%s) on backend of class %s. The reason was: %s", class(ex)[1], label, class(backend)[1], msg) future[["state"]] <- "failed" stop(FutureLaunchError(msg, future = future))})
}, FutureError = function(ex) { future[["state"]] <- "failed" stop(ex)}, error = function(ex) { msg <- conditionMessage(ex)55: run.Future(future)
56: run(future)
57: label <- sQuoteLabel(future) msg <- sprintf("Caught an unexpected error of class %s when trying to launch future (%s) on backend of class %s. The reason was: %s", class(ex)[1], label, class(backend)[1], msg) future[["state"]] <- "failed" stop(FutureLaunchError(msg, future = future))})
55: run.Future(future)
56: run(future)
57: future::future(expr, substitute = FALSE, envir = env_globals, stdout = options$stdout, conditions = options$conditions, globals = chunk_globals, packages = chunk_packages, seed = options$seed, label = labels[[i]])
58: furrr_template(args = x, fn = fn, dots = dots, n = n, options = options, progress = progress, type = type, map_fn = map_fn, names = names, env_globals = env_globals, expr = expr, extract = furrr_map_extract)
59: future::future(expr, substitute = FALSE, envir = env_globals, stdout = options$stdout, conditions = options$conditions, globals = chunk_globals, packages = chunk_packages, seed = options$seed, label = labels[[i]])
58: furrr_template(args = x, fn = fn, dots = dots, n = n, options = options, progress = progress, type = type, map_fn = map_fn, names = names, env_globals = env_globals, expr = expr, extract = furrr_map_extract)
59: furrr_map_template(x = .x, fn = .f, dots = list(...), options = .options, progress = .progress, type = "list", map_fn = purrr::map, env_globals = .env_globals)
60: furrr::future_map(1:n.sims, corr_fun, n = n, p = p, .progress = TRUE, .options = furrr::furrr_options(seed = seed))
61: furrr_map_template(x = .x, fn = .f, dots = list(...), options = .options, progress = .progress, type = "list", map_fn = purrr::map, env_globals = .env_globals)
60: furrr::future_map(1:n.sims, corr_fun, n = n, p = p, .progress = TRUE, .options = furrr::furrr_options(seed = seed))
61: diagnostic.cor.eigs.default(object, n.sims = 2)
62: diagnostic.cor.eigs(object, n.sims = 2)
diagnostic.cor.eigs.default(object, n.sims = 2)
62: diagnostic.cor.eigs(object, n.sims = 2)
An irrecoverable exception occurred. R is aborting now ...
An irrecoverable exception occurred. R is aborting now ...
Warning in mccollect(jobs = jobs, wait = TRUE) :
1 parallel job did not deliver a result
Error: A future (<unnamed-2>) of class MulticoreFuture was interrupted, while running on localhost (pid 43303) [future <unnamed-2> (02879e3aa1e9ab10fc989f6aad0399b5-2); on 02879e3aa1e9ab10fc989f6aad0399b5@macos13-vm.local<43299> at 2026-03-13 05:46:19.409167]
Execution halted
Flavor: r-release-macos-arm64
Version: 0.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘scater’
Flavor: r-oldrel-macos-arm64
Version: 0.2.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-macos-arm64