Last updated on 2025-06-15 17:54:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.42.2 | 14.95 | 144.08 | 159.03 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.42.2 | 12.38 | 107.64 | 120.02 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.42.2 | 253.73 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.42.2 | 241.97 | NOTE | |||
| r-devel-windows-x86_64 | 1.42.2 | 20.00 | 167.00 | 187.00 | NOTE | |
| r-patched-linux-x86_64 | 1.42.2 | 14.64 | 136.74 | 151.38 | NOTE | |
| r-release-linux-x86_64 | 1.42.2 | 15.46 | 133.16 | 148.62 | NOTE | |
| r-release-macos-arm64 | 1.42.2 | 57.00 | ERROR | |||
| r-release-macos-x86_64 | 1.42.2 | 92.00 | ERROR | |||
| r-release-windows-x86_64 | 1.42.2 | 19.00 | 0.00 | 19.00 | FAIL | |
| r-oldrel-macos-arm64 | 1.42.2 | 65.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.42.2 | 96.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.42.2 | 23.00 | 218.00 | 241.00 | NOTE |
Version: 1.42.2
Check: Rd files
Result: NOTE
checkRd: (-1) dkprofile.Rd:64: Lost braces
64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
| ^
checkRd: (-1) dne.Rd:45: Lost braces
45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
| ^
checkRd: (-1) dne.Rd:47: Lost braces
47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
| ^
checkRd: (-1) inclin.Rd:28: Lost braces
28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
| ^
checkRd: (-1) oedist.Rd:43: Lost braces
43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
| ^
checkRd: (-1) oedist.Rd:45: Lost braces
45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
| ^
checkRd: (-1) oedist.Rd:47: Lost braces
47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
| ^
checkRd: (-1) oedist.Rd:49: Lost braces
49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
| ^
checkRd: (-1) opc.Rd:36: Lost braces
36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
| ^
checkRd: (-1) opcr.Rd:30: Lost braces
30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
| ^
checkRd: (-1) rfi.Rd:34: Lost braces
34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
| ^
checkRd: (-1) rfi.Rd:35: Lost braces
35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
| ^
checkRd: (-1) rrate.Rd:34: Lost braces
34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
| ^
checkRd: (-1) shape.index.Rd:44: Lost braces
44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
| ^
checkRd: (-1) shape.index.Rd:46: Lost braces
46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
| ^
checkRd: (-1) shape.index.Rd:48: Lost braces
48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.42.2
Check: examples
Result: ERROR
Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:
> ### Name: dkcrop
> ### Title: crop a mesh
> ### Aliases: dkcrop
>
> ### ** Examples
>
> #Crop above a certain threshold:
> mythreshold <- quantile(elev(dkmodel$basin), 0.5)
> mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin),
+ lwr.limit = mythreshold)
> mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork)
> dkmap(mynewmesh, elev(mynewmesh))
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.42.2
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### Aliases: slope
>
> ### ** Examples
>
> slope <- slope(dkmodel$cusp)
> summary(slope)
Min. 1st Qu. Median Mean 3rd Qu. Max.
1.421 37.738 89.622 70.207 89.962 90.000
>
> #render on a map:
> dkmap(dkmodel$cusp, slope, col.levels = 9, col = "slope",
+ min.range = 0, max.range = 90, legend = TRUE)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 52.12 10.24 65.44 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Version: 1.42.2
Check: installed package size
Result: NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
R 3.0Mb
data 2.0Mb
extdata 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.42.2
Check: examples
Result: ERROR
Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:
> ### Name: dkcrop
> ### Title: crop a mesh
> ### Aliases: dkcrop
>
> ### ** Examples
>
> #Crop above a certain threshold:
> mythreshold <- quantile(elev(dkmodel$basin), 0.5)
> mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin),
+ lwr.limit = mythreshold)
> mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork)
> dkmap(mynewmesh, elev(mynewmesh))
>
> #Crop the sharpest dental elements:
> sharpmesh <- dkcrop(dkmodel$basin, poly.network(dkmodel$basin,
+ Rvcg::vcgCurve(dkmodel$basin)$meanitmax,
+ lwr.limit = quantile(Rvcg::vcgCurve(dkmodel$basin)$meanitmax, 0.8),
+ min.size = 50))
> dkmap(sharpmesh, arc(sharpmesh), col = "arc", col.levels = 20,
+ min.range = -20, max.range = 20)
> #Map of the sharpest elements' elevation, slope and orientation;
> dkmap(sharpmesh, elev(sharpmesh), col = "elev")
*** caught segfault ***
address 0x3b4550be85a8, cause 'memory not mapped'
Traceback:
1: plot.xy(xy, type, ...)
2: plot.default(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r", xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)), xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main, col.axis = col.axis, col.lab = col.lab, col.sub = col.sub, cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub, cex.lab = cex.lab, family = family, font.main = font.main, font.axis = font.axis)
3: graphics::plot(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r", xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)), xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main, col.axis = col.axis, col.lab = col.lab, col.sub = col.sub, cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub, cex.lab = cex.lab, family = family, font.main = font.main, font.axis = font.axis)
4: bg.make()
5: doTryCatch(return(expr), name, parentenv, handler)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
9: try(expression)
10: rgl::bgplot3d(bg.make())
11: dkmap(sharpmesh, elev(sharpmesh), col = "elev")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64