CRAN Package Check Results for Package doolkit

Last updated on 2025-06-15 17:54:10 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.42.2 14.95 144.08 159.03 NOTE
r-devel-linux-x86_64-debian-gcc 1.42.2 12.38 107.64 120.02 NOTE
r-devel-linux-x86_64-fedora-clang 1.42.2 253.73 NOTE
r-devel-linux-x86_64-fedora-gcc 1.42.2 241.97 NOTE
r-devel-windows-x86_64 1.42.2 20.00 167.00 187.00 NOTE
r-patched-linux-x86_64 1.42.2 14.64 136.74 151.38 NOTE
r-release-linux-x86_64 1.42.2 15.46 133.16 148.62 NOTE
r-release-macos-arm64 1.42.2 57.00 ERROR
r-release-macos-x86_64 1.42.2 92.00 ERROR
r-release-windows-x86_64 1.42.2 19.00 0.00 19.00 FAIL
r-oldrel-macos-arm64 1.42.2 65.00 NOTE
r-oldrel-macos-x86_64 1.42.2 96.00 ERROR
r-oldrel-windows-x86_64 1.42.2 23.00 218.00 241.00 NOTE

Check Details

Version: 1.42.2
Check: Rd files
Result: NOTE checkRd: (-1) dkprofile.Rd:64: Lost braces 64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)} | ^ checkRd: (-1) dne.Rd:45: Lost braces 45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)} | ^ checkRd: (-1) dne.Rd:47: Lost braces 47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)} | ^ checkRd: (-1) inclin.Rd:28: Lost braces 28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) oedist.Rd:43: Lost braces 43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) oedist.Rd:45: Lost braces 45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)} | ^ checkRd: (-1) oedist.Rd:47: Lost braces 47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)} | ^ checkRd: (-1) oedist.Rd:49: Lost braces 49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)} | ^ checkRd: (-1) opc.Rd:36: Lost braces 36 | \doi{10.1038/nature05433}{Evans et al. (2007)} | ^ checkRd: (-1) opcr.Rd:30: Lost braces 30 | \doi{10.1038/nature10880}{Wilson et al. (2012)} | ^ checkRd: (-1) rfi.Rd:34: Lost braces 34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)} | ^ checkRd: (-1) rfi.Rd:35: Lost braces 35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) rrate.Rd:34: Lost braces 34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)} | ^ checkRd: (-1) shape.index.Rd:44: Lost braces 44 | \doi{10.1029/TR013i001p00350}{Horton (1932)} | ^ checkRd: (-1) shape.index.Rd:46: Lost braces 46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)} | ^ checkRd: (-1) shape.index.Rd:48: Lost braces 48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.42.2
Check: examples
Result: ERROR Running examples in ‘doolkit-Ex.R’ failed The error most likely occurred in: > ### Name: dkcrop > ### Title: crop a mesh > ### Aliases: dkcrop > > ### ** Examples > > #Crop above a certain threshold: > mythreshold <- quantile(elev(dkmodel$basin), 0.5) > mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin), + lwr.limit = mythreshold) > mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork) > dkmap(mynewmesh, elev(mynewmesh)) Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 1.42.2
Check: PDF version of manual
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > ### Aliases: slope > > ### ** Examples > > slope <- slope(dkmodel$cusp) > summary(slope) Min. 1st Qu. Median Mean 3rd Qu. Max. 1.421 37.738 89.622 70.207 89.962 90.000 > > #render on a map: > dkmap(dkmodel$cusp, slope, col.levels = 9, col = "slope", + min.range = 0, max.range = 90, legend = TRUE) > > > > ### * <FOOTER> > ### > cleanEx() > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 52.12 10.24 65.44 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-release-windows-x86_64

Version: 1.42.2
Check: installed package size
Result: NOTE installed size is 7.4Mb sub-directories of 1Mb or more: R 3.0Mb data 2.0Mb extdata 2.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.42.2
Check: examples
Result: ERROR Running examples in ‘doolkit-Ex.R’ failed The error most likely occurred in: > ### Name: dkcrop > ### Title: crop a mesh > ### Aliases: dkcrop > > ### ** Examples > > #Crop above a certain threshold: > mythreshold <- quantile(elev(dkmodel$basin), 0.5) > mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin), + lwr.limit = mythreshold) > mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork) > dkmap(mynewmesh, elev(mynewmesh)) > > #Crop the sharpest dental elements: > sharpmesh <- dkcrop(dkmodel$basin, poly.network(dkmodel$basin, + Rvcg::vcgCurve(dkmodel$basin)$meanitmax, + lwr.limit = quantile(Rvcg::vcgCurve(dkmodel$basin)$meanitmax, 0.8), + min.size = 50)) > dkmap(sharpmesh, arc(sharpmesh), col = "arc", col.levels = 20, + min.range = -20, max.range = 20) > #Map of the sharpest elements' elevation, slope and orientation; > dkmap(sharpmesh, elev(sharpmesh), col = "elev") *** caught segfault *** address 0x3b4550be85a8, cause 'memory not mapped' Traceback: 1: plot.xy(xy, type, ...) 2: plot.default(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r", xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)), xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main, col.axis = col.axis, col.lab = col.lab, col.sub = col.sub, cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub, cex.lab = cex.lab, family = family, font.main = font.main, font.axis = font.axis) 3: graphics::plot(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r", xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)), xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main, col.axis = col.axis, col.lab = col.lab, col.sub = col.sub, cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub, cex.lab = cex.lab, family = family, font.main = font.main, font.axis = font.axis) 4: bg.make() 5: doTryCatch(return(expr), name, parentenv, handler) 6: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: tryCatchList(expr, classes, parentenv, handlers) 8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 9: try(expression) 10: rgl::bgplot3d(bg.make()) 11: dkmap(sharpmesh, elev(sharpmesh), col = "elev") An irrecoverable exception occurred. R is aborting now ... Flavor: r-oldrel-macos-x86_64