Last updated on 2025-06-19 17:55:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.3 | 9.13 | 187.85 | 196.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.3 | 6.42 | 149.78 | 156.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.3 | 307.98 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.3 | 325.99 | OK | |||
| r-devel-windows-x86_64 | 0.0.3 | 12.00 | 196.00 | 208.00 | OK | |
| r-patched-linux-x86_64 | 0.0.3 | 9.34 | 189.44 | 198.78 | ERROR | |
| r-release-linux-x86_64 | 0.0.3 | 7.98 | 188.06 | 196.04 | OK | |
| r-release-macos-arm64 | 0.0.3 | 103.00 | ERROR | |||
| r-release-macos-x86_64 | 0.0.3 | 181.00 | ERROR | |||
| r-release-windows-x86_64 | 0.0.3 | 11.00 | 194.00 | 205.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.3 | 102.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.0.3 | 220.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.0.3 | 14.00 | 239.00 | 253.00 | OK |
Version: 0.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘gaawr2.Rmd’ using rmarkdown
running: bash -c "export message=\"Hello, world!\"
echo \"print('\$message')\" > hello.R
R CMD BATCH hello.R
R --no-save -q < hello.R
R --no-save -q <<END
message <- Sys.getenv(\"message\"); print(message)
source(\"hello.R\")
END
echo \${message} | \\
Rscript -e '
message <- scan(\"stdin\", what=\"\", sep=\"\\n\", quiet=TRUE);
write.table(message, col.names=FALSE, row.names=FALSE,
quote=FALSE)
' | \\
cat
rm hello.*"
** Processing: gaawr2/diabetes-1.png
1536x1152 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64039 bytes
Input file size = 64198 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 62264
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 62264
Output IDAT size = 62264 bytes (1775 bytes decrease)
Output file size = 62339 bytes (1859 bytes = 2.90% decrease)
** Processing: gaawr2/hwe-1.png
1920x1536 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 168050 bytes
Input file size = 168365 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 126018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 126018
Output IDAT size = 126018 bytes (42032 bytes decrease)
Output file size = 126093 bytes (42272 bytes = 25.11% decrease)
** Processing: gaawr2/eqtl-1.png
1536x1152 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 109134 bytes
Input file size = 109365 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 105725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 105725
Output IDAT size = 105725 bytes (3409 bytes decrease)
Output file size = 105800 bytes (3565 bytes = 3.26% decrease)
Quitting from gaawr2.Rmd:470-513 [ot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! lexical error: invalid char in json text.
<html><head> <meta http-equiv="
(right here) ------^
---
Backtrace:
▆
1. └─jsonlite::fromJSON(data)
2. └─jsonlite:::parse_and_simplify(...)
3. └─jsonlite:::parseJSON(txt, bigint_as_char)
4. └─jsonlite:::parse_string(txt, bigint_as_char)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gaawr2.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
<html><head> <meta http-equiv="
(right here) ------^
--- failed re-building ‘gaawr2.Rmd’
--- re-building ‘web.Rmd’ using rmarkdown
[WARNING] Citeproc: citation tsv not found
--- finished re-building ‘web.Rmd’
SUMMARY: processing the following file failed:
‘gaawr2.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘gaawr2.Rmd’ using rmarkdown
Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75''
running: bash -c "export message=\"Hello, world!\"
echo \"print('\$message')\" > hello.R
R CMD BATCH hello.R
R --no-save -q < hello.R
R --no-save -q <<END
message <- Sys.getenv(\"message\"); print(message)
source(\"hello.R\")
END
echo \${message} | \\
Rscript -e '
message <- scan(\"stdin\", what=\"\", sep=\"\\n\", quiet=TRUE);
write.table(message, col.names=FALSE, row.names=FALSE,
quote=FALSE)
' | \\
cat
rm hello.*"
Quitting from gaawr2.Rmd:409-415 [ensdb]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found
---
Backtrace:
▆
1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75)
2. └─base::.handleSimpleError(...)
3. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gaawr2.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found
--- failed re-building ‘gaawr2.Rmd’
--- re-building ‘web.Rmd’ using rmarkdown
[WARNING] Citeproc: citation tsv not found
--- finished re-building ‘web.Rmd’
SUMMARY: processing the following file failed:
‘gaawr2.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64