Last updated on 2026-09-25 17:58:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 92.39 | 186.83 | 279.22 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 69.57 | 128.60 | 198.17 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 76.00 | 125.06 | 201.06 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 75.00 | 120.07 | 195.07 | OK | |
| r-devel-windows-x86_64 | 1.0 | 119.00 | 288.00 | 407.00 | OK | |
| r-patched-linux-x86_64 | 1.0 | 93.44 | 175.28 | 268.72 | OK | |
| r-release-linux-x86_64 | 1.0 | 93.07 | 175.19 | 268.26 | OK | |
| r-release-macos-arm64 | 1.0 | 21.00 | 55.00 | 76.00 | OK | |
| r-release-macos-x86_64 | 1.0 | 60.00 | 160.00 | 220.00 | OK | |
| r-release-windows-x86_64 | 1.0 | 115.00 | 217.00 | 332.00 | OK | |
| r-oldrel-macos-arm64 | 1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0 | 54.00 | 172.00 | 226.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0 | 135.00 | 266.00 | 401.00 | OK |
Version: 1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(kmeRtone)
>
> testthat::test_check("kmeRtone")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
------------------------------------------------------------
Extraction of Case K-mers
------------------------------------------------------------
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 00:10 0
2 18.60M 2 382.7k 0 0 33243 0 09:46 00:11 09:35 375.6k
73 18.60M 73 13.60M 0 0 1.05M 0 00:17 00:12 00:05 6.58M
100 18.60M 100 18.60M 0 0 1.42M 0 00:13 00:13 6.58M
100 18.60M 100 18.60M 0 0 1.42M 0 00:13 00:13 6.58M
100 18.60M 100 18.60M 0 0 1.42M 0 00:13 00:13 6.58M
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 00:11 0
3 11.01M 3 374.8k 0 0 31889 0 06:02 00:12 05:50 368.0k
100 11.01M 100 11.01M 0 0 873.5k 0 00:12 00:12 368.0k
100 11.01M 100 11.01M 0 0 873.5k 0 00:12 00:12 368.0k
100 11.01M 100 11.01M 0 0 873.5k 0 00:12 00:12 368.0k
Extracting 2-mers from chr20............DONE! -- 1.2 mins
Extracting 2-mers from chr21............DONE! -- 29.56 secs
Extracting 2-mers from chr22............
Downloading chr20.fa.gz from UCSC...
Downloading chr21.fa.gz from UCSC...
Saving _problems/test_score-40.R
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_score.R:25:1'): (code run outside of `test_that()`) ────────────
Error in `download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress)`: cannot open URL 'https://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/'
Backtrace:
▆
1. └─kmeRtone::kmeRtone(...) at test_score.R:25:1
2. └─kmeRtone::SCORE(...)
3. └─kmeRtone::extractKmers(...)
4. └─future.apply::future_lapply(...)
5. └─future.apply:::future_xapply(...)
6. └─base::tryCatch(...)
7. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. └─base (local) tryCatchOne(...)
9. └─value[[3L]](cond)
10. └─future.apply:::onError(e, futures = fs, debug = debug)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc