Last updated on 2026-02-25 22:52:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.15.0 | 92.13 | 193.18 | 285.31 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.16.0 | 73.80 | 147.95 | 221.75 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.15.0 | 215.00 | 296.90 | 511.90 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.16.0 | 205.00 | 276.06 | 481.06 | OK | |
| r-devel-macos-arm64 | 1.16.0 | 21.00 | 46.00 | 67.00 | OK | |
| r-devel-windows-x86_64 | 1.16.0 | 109.00 | 226.00 | 335.00 | OK | |
| r-patched-linux-x86_64 | 1.15.0 | OK | ||||
| r-release-linux-x86_64 | 1.15.0 | 88.37 | 183.32 | 271.69 | OK | |
| r-release-macos-arm64 | 1.16.0 | 17.00 | 49.00 | 66.00 | OK | |
| r-release-macos-x86_64 | 1.16.0 | 65.00 | 152.00 | 217.00 | ERROR | |
| r-release-windows-x86_64 | 1.16.0 | 93.00 | 223.00 | 316.00 | OK | |
| r-oldrel-macos-arm64 | 1.16.0 | 16.00 | 52.00 | 68.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.16.0 | 66.00 | 274.00 | 340.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.16.0 | 85.00 | 228.00 | 313.00 | OK |
Version: 1.16.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/87s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.16.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
Failed with error: 'there is no package called 'shiny''
Saving _problems/test_conversion-15.R
Failed with error: 'there is no package called 'shiny''
Saving _problems/test_conversion-22.R
Saving _problems/test_conversion-23.R
Failed with error: 'there is no package called 'shiny''
[ FAIL 3 | WARN 3 | SKIP 1 | PASS 492 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• {shiny} is not installed. (1): 'test_conversion.R:36:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:15:3'): vcfR2genind works ───────────────────────
Expected `my_genind` to inherit from "character".
Actual inheritance: "matrix"/"array"
── Failure ('test_conversion.R:22:3'): vcfR2genind works, return.alleles = TRUE ──
Expected `my_genind` to inherit from "character".
Actual inheritance: "matrix"/"array"
── Error ('test_conversion.R:23:3'): vcfR2genind works, return.alleles = TRUE ──
Error in `my_genind@tab`: no applicable method for `@` applied to an object of class "matrix"
Backtrace:
▆
1. ├─base::unlist(...) at test_conversion.R:23:3
2. ├─base::lapply(...)
3. ├─base::strsplit(colnames(my_genind@tab), ".", fixed = TRUE)
4. └─base::colnames(my_genind@tab)
5. └─base::is.data.frame(x)
[ FAIL 3 | WARN 3 | SKIP 1 | PASS 492 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.16.0
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
libs 4.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64