CRAN Package Check Results for Package vcfR

Last updated on 2026-02-25 22:52:02 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.15.0 92.13 193.18 285.31 OK
r-devel-linux-x86_64-debian-gcc 1.16.0 73.80 147.95 221.75 OK
r-devel-linux-x86_64-fedora-clang 1.15.0 215.00 296.90 511.90 OK
r-devel-linux-x86_64-fedora-gcc 1.16.0 205.00 276.06 481.06 OK
r-devel-macos-arm64 1.16.0 21.00 46.00 67.00 OK
r-devel-windows-x86_64 1.16.0 109.00 226.00 335.00 OK
r-patched-linux-x86_64 1.15.0 OK
r-release-linux-x86_64 1.15.0 88.37 183.32 271.69 OK
r-release-macos-arm64 1.16.0 17.00 49.00 66.00 OK
r-release-macos-x86_64 1.16.0 65.00 152.00 217.00 ERROR
r-release-windows-x86_64 1.16.0 93.00 223.00 316.00 OK
r-oldrel-macos-arm64 1.16.0 16.00 52.00 68.00 NOTE
r-oldrel-macos-x86_64 1.16.0 66.00 274.00 340.00 NOTE
r-oldrel-windows-x86_64 1.16.0 85.00 228.00 313.00 OK

Check Details

Version: 1.16.0
Check: tests
Result: ERROR Running ‘testthat.R’ [40s/87s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > library("testthat") > #library("vcfR") > # > # > test_check("vcfR") Loading required package: vcfR ***** *** vcfR *** ***** This is vcfR 1.16.0 browseVignettes('vcfR') # Documentation citation('vcfR') # Citation ***** ***** ***** ***** Failed with error: 'there is no package called 'shiny'' Saving _problems/test_conversion-15.R Failed with error: 'there is no package called 'shiny'' Saving _problems/test_conversion-22.R Saving _problems/test_conversion-23.R Failed with error: 'there is no package called 'shiny'' [ FAIL 3 | WARN 3 | SKIP 1 | PASS 492 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • {shiny} is not installed. (1): 'test_conversion.R:36:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:15:3'): vcfR2genind works ─────────────────────── Expected `my_genind` to inherit from "character". Actual inheritance: "matrix"/"array" ── Failure ('test_conversion.R:22:3'): vcfR2genind works, return.alleles = TRUE ── Expected `my_genind` to inherit from "character". Actual inheritance: "matrix"/"array" ── Error ('test_conversion.R:23:3'): vcfR2genind works, return.alleles = TRUE ── Error in `my_genind@tab`: no applicable method for `@` applied to an object of class "matrix" Backtrace: ▆ 1. ├─base::unlist(...) at test_conversion.R:23:3 2. ├─base::lapply(...) 3. ├─base::strsplit(colnames(my_genind@tab), ".", fixed = TRUE) 4. └─base::colnames(my_genind@tab) 5. └─base::is.data.frame(x) [ FAIL 3 | WARN 3 | SKIP 1 | PASS 492 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-x86_64

Version: 1.16.0
Check: installed package size
Result: NOTE installed size is 6.9Mb sub-directories of 1Mb or more: libs 4.9Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64