pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data
Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) <doi:10.1093/bioinformatics/bty191>.
| Version: | 0.0.2 |
| Depends: | R (≥ 3.4.4), ggplot2 |
| Imports: | dplyr, tibble, stringr, rlang |
| Suggests: | testthat, covr, knitr, ggpubr, rmarkdown, microbenchmark |
| Published: | 2020-12-08 |
| DOI: | 10.32614/CRAN.package.pafr |
| Author: | David Winter 
[aut, cre],
Kate Lee [ctb],
Murray Cox [ctb] |
| Maintainer: | David Winter <david.winter at gmail.com> |
| BugReports: | https://github.com/dwinter/pafr/issues |
| License: | MIT + file LICENSE |
| URL: | https://dwinter.github.io/pafr/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | pafr results [issues need fixing before 2025-04-22] |
Documentation:
| Reference manual: | pafr.pdf |
| Vignettes: |
pafr_tutorial |
Downloads:
| Package source: | pafr_0.0.2.tar.gz |
| Windows binaries: | r-devel: pafr_0.0.2.zip, r-release: pafr_0.0.2.zip, r-oldrel: pafr_0.0.2.zip |
| macOS binaries: | r-devel (arm64): pafr_0.0.2.tgz, r-release (arm64): pafr_0.0.2.tgz, r-oldrel (arm64): pafr_0.0.2.tgz, r-devel (x86_64): pafr_0.0.2.tgz, r-release (x86_64): pafr_0.0.2.tgz, r-oldrel (x86_64): pafr_0.0.2.tgz |
Reverse dependencies:
| Reverse depends: | minimapR |
Linking:
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