bidser: Work with 'BIDS' (Brain Imaging Data Structure) Projects
Tools for working with 'BIDS' (Brain Imaging Data Structure) formatted neuroimaging datasets. The package provides functionality for reading and querying 'BIDS'-compliant projects, creating mock 'BIDS' datasets for testing, and extracting preprocessed data from 'fMRIPrep' derivatives. It supports searching and filtering 'BIDS' files by various entities such as subject, session, task, and run to streamline neuroimaging data workflows. See Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44> for the 'BIDS' specification.
| Version: | 0.5.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | data.table, stringr, data.tree, tidyselect, dplyr, fs, jsonlite, purrr, readr, rlang, tibble, tidyr |
| Suggests: | neuroim2, httr, crayon, stringdist, ggplot2, plotly, patchwork, viridis, scales, knitr, rmarkdown, testthat, covr, lintr, gluedown, RNifti, future, future.apply, pkgdown, albersdown |
| Published: | 2026-07-06 |
| DOI: | 10.32614/CRAN.package.bidser |
| Author: | Bradley Buchsbaum 
[aut, cre] |
| Maintainer: | Bradley Buchsbaum <brad.buchsbaum at gmail.com> |
| BugReports: | https://github.com/bbuchsbaum/bidser/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/bbuchsbaum/bidser, https://bbuchsbaum.github.io/bidser/ |
| NeedsCompilation: | no |
| Citation: | bidser citation info |
| Materials: | README, NEWS |
| CRAN checks: | bidser results |
Documentation:
| Reference manual: | bidser.html , bidser.pdf |
| Vignettes: |
Working with Confounds and Variables (source, R code) Discovering and Querying Derivatives (source, R code) Create Mock BIDS Projects for Tests and Examples (source, R code) Getting Started with bidser (source, R code) |
Downloads:
| Package source: | bidser_0.5.0.tar.gz |
| Windows binaries: | r-devel: bidser_0.2.0.zip, r-release: bidser_0.2.0.zip, r-oldrel: bidser_0.2.0.zip |
| macOS binaries: | r-release (arm64): bidser_0.5.0.tgz, r-oldrel (arm64): bidser_0.5.0.tgz, r-release (x86_64): bidser_0.5.0.tgz, r-oldrel (x86_64): bidser_0.5.0.tgz |
| Old sources: | bidser archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=bidser to link to this page.